Job Description P71229 Confidence 99.63% Date Thu Jan 5 12:12:26 GMT 2012 Rank 54 Aligned Residues 205 % Identity 19% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		338	.	340	.	.	.	.	.	.		.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure											.						.	.
Query SS confidence											.						.	.
Query Sequence		L	L	S	N	L	G	I	G	D	.	I	I	Y	Q	S	.	.	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S
Query Conservation											.						.	.
Alig confidence											.						.	.
Template Conservation
Template Sequence		L	N	P	K	Y	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	R	G	Y	R	V	I	Y	S	S	A	D	D	F	A	Q	A	M	V	E	H
Template Known Secondary structure				T	T			S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.			.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	.	.	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W
Query Conservation																										.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.												.	.																																		.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	K	K	G	T	I	N	E	F	R	N	M	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	L	.	.	.	.	.	.	.	.	E	K	Q	I	I	L	A	S	D	R	H	P	Q
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.			T											T		S							G	G	G	G	T	T		S																T	.	.	.	.	.	.	.	.	T								S	S		G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template SS confidence
		159													160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.	.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.			.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	.	.	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V
Query Conservation																									.	.
Alig confidence				.	.	.																			.	.									.	.	.	.	.	.	.	.													.	.	.													.	.
Template Conservation				.	.	.																													.	.	.	.	.	.	.	.													.	.	.													.	.
Template Sequence		K	L	.	.	.	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	K	.	.	.	.	.	.	.	.	I	I	K	E	K	L	K	E	F	N	L	E	.	.	.	L	R	K	E	V	I	D	Y	L	L	E	N	.	.	T	K	N	V	R	E	I	E	G	K
Template Known Secondary structure		G		.	.	.	T	T	S											S									S						.	.	.	.	.	.	.	.									T	T			.	.	.													.	.			S
Template Predicted Secondary structure				.	.	.																													.	.	.	.	.	.	.	.													.	.	.													.	.
Template SS confidence
		219	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.
		571	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	R	A	V	L	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	L	I	K	L	K	G
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions