Job Description P71229 Confidence 97.41% Date Thu Jan 5 12:12:26 GMT 2012 Rank 145 Aligned Residues 154 % Identity 7% Template c2gx5B_ PDB info PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody Resolution 1.74 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	V	L	V	D	I	T	N	A	V	L	S	H	L	D	L	D	D	L	I	A	D	V	A	R	E	I	H	H	F	F	G	L	A	S	V	S	M	V	L	G	D	H	R	K	N	E	K	F	S	L	W	C	S	D	L	S	A	S	H	C	A	C	L	P	R	C	M	P	G	E	S	V	L	L	T	Q	T	L
Query Conservation
Alig confidence																																			.	.	.
Template Conservation																																			.	.	.
Template Sequence		L	Q	K	T	R	I	I	N	S	M	L	Q	A	A	A	G	K	P	V	N	F	K	E	M	A	E	T	L	R	D	V	I	D	.	.	.	S	N	I	F	V	V	S	R	R	G	K	L	L	G	Y	S	I	N	Q	Q	I	E	N	D	R	M	K	K	M	L	E	D	R	Q	F	P	E	E	Y	T	K	N	L	F
Template Known Secondary structure														S				S																T	.	.	.	S							T	T	S	B							S	S														T	B
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	R	Q	P	T	L	T	H	R	A	D	D	L	F	L	W	Q	R	D	P	L	L	L	L	L	A	S	N	G	C	E	S	A	L	L	I	P	L	T	F	G	N	H	T	P	G	A	L	L	L	A	H	T	S	S	T	L	F	S	E	E	N	C	Q	L	L	Q	H	I	A	D	R	I	A	I	A	V	G	N
Query Conservation
Alig confidence																					.	.	.	.																															.
Template Conservation																					.	.	.	.																															.
Template Sequence		N	V	P	E	T	S	S	N	L	D	I	N	S	E	T	A	F	P	V	.	.	.	.	E	N	R	D	L	F	Q	A	G	L	T	T	I	V	P	I	I	G	G	G	E	R	L	G	T	L	I	L	S	R	.	L	Q	D	Q	F	N	D	D	D	L	I	L	A	E	Y	G	A	T	V	V	G	M	E	I	L	R
Template Known Secondary structure		T			S							T	T					S		G	.	.	.	.	G	G	G	G	G	G	S	S	S										T	T											.	S	S
Template Predicted Secondary structure																					.	.	.	.																															.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		314	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		157	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions