Job Description P71229 Confidence 98.57% Date Thu Jan 5 12:12:26 GMT 2012 Rank 130 Aligned Residues 198 % Identity 15% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S	E	L	F	G	H	D	K	G
Query Conservation
Alig confidence																								.																																													.	.	.	.	.	.	.	.	.
Template Conservation																								.																																													.	.	.	.	.	.	.	.	.
Template Sequence		S	L	N	A	L	S	H	N	E	E	L	T	N	F	L	K	S	L	S	D	Q	P	.	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	.	.	.	.	.	.	.	.	.	I	T	P	S
Template Known Secondary structure		S	G	G	G			S										T	T	T	T		T	.	T										S	T	T	S	S							T						S		T	T									S	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.										.	.	80	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.			.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	.	.	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F
Query Conservation																					.	.
Alig confidence																					.	.																												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Sequence		N	D	R	I	V	I	Q	E	L	L	K	E	V	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	Y	S	K	.	.	.	.	.	.	.	.	.	.	.	N	I	R	L	I	M	V	C	D	.	.	.	.	.	.	.	S	M	S	P	I
Template Known Secondary structure															T	T	T	T											T	T	S	S															S	T	T	.	.	.	.	.	.	.	.	.	.	.	T								S	.	.	.	.	.	.	.		S		S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.												.	.	.	.	.	.	.	.	160								.	.	.	.	.
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.																	.	.														.
Template Conservation																						.	.	.	.	.	.	.	.																	.	.														.
Template Sequence		I	A	P	I	K	S	Q	C	L	L	I	R	C	P	A	P	S	D	S	E	.	.	.	.	.	.	.	.	I	S	T	I	L	S	D	V	V	T	N	E	R	I	Q	L	.	.	E	T	K	D	I	L	K	R	I	A	Q	A	S	.	N	G	N	L	R	V	S	L	L	M	L	E	S	M	A	L	N	N	E
Template Known Secondary structure							T	T	S													.	.	.	.	.	.	.	.													T				.	.			S											.	T	T										T					T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.																	.	.														.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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