Job Description P71229 Confidence 99.05% Date Thu Jan 5 12:12:26 GMT 2012 Rank 101 Aligned Residues 203 % Identity 14% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.					.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	.	.	.	.	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S	E	L	F	G
Query Conservation																																																			.	.	.	.
Alig confidence																						.	.																												.	.	.	.
Template Conservation																						.	.
Template Sequence		N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	K	.	.	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K	V	K	N
Template Known Secondary structure		S	T	T	T			S			T	T								T	T	.	.		T	T									S	T	T	S	S																			T	T	S						S	S	S								T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	S	.	.	.	.	.	.	.	.	.	.	.	G	V	T	R	F	C	L	I	C	N	.	.	.	.	.	.	.	Y	V	T
Template Known Secondary structure					S							T	T					S				S							T	T	G	G	G	S															T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S	.	.	.	.	.	.	.		G	G
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.												.	.	.	.	.	.	.	.	170	.								.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	.	.	.	.	.	.	.	.	.	.	.	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	.	A	G	D	L	R	R	G	I	T	L	L	Q	S	A	S	K	G
Template Known Secondary structure		G	S								S																							T	.	.	.	.	.	.	.	.	.	.	.	T	T															T	.	S	S												T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.												.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions