Job Description P71229 Confidence 98.94% Date Thu Jan 5 12:12:26 GMT 2012 Rank 109 Aligned Residues 199 % Identity 15% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I	P	A	S	L	L	E	S	E	L	F	G	H	D	K	G
Query Conservation
Alig confidence																							.	.																																																									.
Template Conservation																							.	.																																																									.
Template Sequence		V	L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	.	.	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	K	H	.
Template Known Secondary structure		S	G	G	G			S		T												S	.	.											S	T	T	S	S														G	G	G										T	T	S			S						T					.
Template Predicted Secondary structure																							.	.																																																									.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S
Query Conservation
Alig confidence		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	F	A	Q	K	K	L	H	L	P	P	G	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	Y	S	.	.	.	.	.	.	.	.	.	.	.	N	S	T	R	F	A	F	A	C	N	.	.	.	.	.	.	.	Q	S	N	K	I	I	E
Template Known Secondary structure		.	.	.	.	.										T	T									S	G	G	G	S							T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S	.	.	.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.
Template SS confidence
							96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E	L	E	N	V	I	E	R	A	V	L	L	T	R
Query Conservation
Alig confidence																	.	.	.	.																	.	.	.	.	.	.	.																.
Template Conservation																	.	.	.	.																	.	.	.	.	.	.	.																.
Template Sequence		P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	.	.	.	.	D	E	D	V	L	K	R	L	L	Q	I	I	K	L	E	D	.	.	.	.	.	.	.	V	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	.	E	G	D	M	R	Q	A	I	N	N	L	Q	S	T	V	A	G	H	G
Template Known Secondary structure					T	T	S										.	.	.	.																T	.	.	.	.	.	.	.			B													.	T	T																	S
Template Predicted Secondary structure																	.	.	.	.																	.	.	.	.	.	.	.																.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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