Job Description P71229 Confidence 98.75% Date Thu Jan 5 12:12:26 GMT 2012 Rank 126 Aligned Residues 203 % Identity 12% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	G	D	I	I	Y	Q	S	Q	A	M	E	D	L	L	Q	Q	V	D	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	A	A	I
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		N	L	Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	G	Y	D	I	L	E	Q	N	A	S	D	V
Template Known Secondary structure		S	G	G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	T								T	T	S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.				.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		P	A	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	.	.	.	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I
Query Conservation																																																	.	.	.
Alig confidence																															.																		.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	.	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	P	L	I
Template Known Secondary structure										T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	.	T	T	S							S	G	G	G			T	T	S	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.														.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V
Query Conservation
Alig confidence							.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.														.
Template Conservation							.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.														.
Template Sequence		L	I	C	N	E	.	.	.	.	.	.	R	N	L	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	.	.	.	.	.	.	.	.	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	F	K	.	.	.	L	D	P	N	V	I	D	R	L	I	Q	T	T	.	R	G	D	I
Template Known Secondary structure					S		.	.	.	.	.	.	T	T	S	S	T	T	G	G	G	T	T	T	S										.	.	.	.	.	.	.	.																T			.	.	.			T	T									T	.	T	T
Template Predicted Secondary structure							.	.	.	.	.	.																							.	.	.	.	.	.	.	.																			.	.	.														.
Template SS confidence
		453	.	.	.	.							.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.									480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.				.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	E	N	V	I	E	R	A	V	L	L	T	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	V	I	N	L	L	S	T	I	S	T	T	T	K	T
Template Known Secondary structure									T						S	S
Template Predicted Secondary structure
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions