Job Description P71229 Confidence 98.16% Date Thu Jan 5 12:12:26 GMT 2012 Rank 136 Aligned Residues 173 % Identity 16% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.																						.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.					.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		Q	A	M	E	D	L	L	Q	Q	V	D	I	V	A	K	S	D	S	T	V	L	I	C	G	E	T	G	T	G	K	E	V	I	A	R	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	L	S	P	R	R	D	K	P	L	V	K	I	N	C	.	.	.	.	A	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence														.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation														.
Template Sequence		P	D	F	E	K	L	V	A	S	Y	Q	A	.	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T
Template Known Secondary structure									T	T	T	T	T	.	S				S								T	T	S	S													T		S	S			S	S	S			S		S								T	S			S	S								T	T	S	S	S
Template Predicted Secondary structure														.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	A	S	L	L	E	S	E	L	F	G	H	D	K	G	A	F	T	G	A	I	N	T	H	R	G	R	F	E	I	A	D	G	G	T	L	F	L	D	E	I	G	D	L	P	L	E	L	Q	P	K	L	L	R	V	L	Q	E	R	E	I	E	R	L	G	G	S	R	T	I	P	V	N	V	R	V	I	A	A
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	.	.	.	.	.	.	.	.	.	.	.	P	A	E	T	W	F	F	L	A
Template Known Secondary structure		B													S	S			T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.					S		G	G	G	B														S		.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110													.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	R	D	L	W	Q	M	V	E	D	R	Q	F	R	S	D	L	F	Y	R	L	N	V	F	P	L	E	L	P	P	L	R	D	R	P	E	D	I	P	L	L	A	K	H	F	T	Q	K	M	A	R	H	M	N	R	A	I	D	A	I	P	T	E	A	L	R	Q	L	M	S	W	D	W	P	G	N	V	R	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.																	.
Template Conservation				.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.																	.
Template Sequence		T	R	.	.	.	.	.	.	.	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E	Q	Y	.	.	.	.	.	.	.	.	A	V	T	W	L	S	R	E	.	.	.	.	.	.	.	.	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	.	G	S	P	G	A
Template Known Secondary structure			S	.	.	.	.	.	.	.		S	T	T	S		T	T	T	T	T	T	S													.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	S													T	T	T	.	T
Template Predicted Secondary structure				.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.																	.
Template SS confidence
		145	.								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200
		567	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	V	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	A	L	F	Q
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions