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Job DescriptionP71229
Confidence99.55%DateThu Jan 5 12:12:26 GMT 2012
Rank63Aligned Residues273
% Identity15%Templatec1hqcB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:ruvb; PDBTitle: structure of ruvb from thermus thermophilus hb8
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   343......350.........360.........370 .........380.........390.........400.........410.........
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Query Sequence  GIGDIIYQSQAMEDLLQQVDIVAKSDST. . . VLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPASLLESELFGH
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Template Sequence  TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL. . . GVNLRVTSGPAIEKPGDLAAILAN
Template Known Secondary structure  STTTS
S
SS
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TT

...T


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   10.........20.........30.........40.........50.........60.. .......70.........80......
 
   420.........430.........440.........450.........460.........470.........480.........490.........
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Query Sequence  DKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQ
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Template Sequence  SL. . . . . . . . . . . . . . . . EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL
Template Known Secondary structure  T
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TT
TTTTS

S

BSSSSS
B





SS
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   87. .90.........100.........110.........120.........130.........140.........150
 
   500.........510.........520.........530.........540.........550.........560.........570.........
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Query Sequence  FRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTR
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Template Sequence  ITAPLLSRFGIVEHLEYYTPEELAQG. . . . . . . . . . VMRDARLLGVRITEEAALEIGRR. SRGTMRVAKRLFRRVRDFAQ
Template Known Secondary structure 
S
STTTT
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B
.S
S
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   151........160.........170...... ...180.........190......... 200.........210.........
 
   580.. .......590.........600.........610.........620.........630.........640.........650......
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Query Sequence  GNS. . . LNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLL
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Template Sequence  VAGEEVITRERALEALAALGLDELG. . . . . . . . . . . . . . . . . LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE
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SSSS
B
T

TT
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   220.........230.........240.... .....250.........260.........270.........280..
 
   657..660..
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Query Sequence  SRMQRL
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Template Conservation        
Template Sequence  EVHEPY
Template Known Secondary structure  T
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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