Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	W	G	F	V	F	V	S	F	I	S	K	E	L	A	L	G	Q	S	E	Y	I	S	W	V	K	C	T	S	W	L	S	N	F	V	N	L	R	G	L	R	Q	P	D	G	R	P	L	Y	E	Y	H	A	T	N	D	E	Y	T
Secondary structure
SS confidence
Disorder		?	?	?	?												?	?	?	?	?	?	?	?	?														?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	L	T	Q	L	L	R	A	V	G	Q	S	Q	S	N	I	C	N	R	D	F	A	A	C	F	V	L	F	C	S	E	W	Y	R	R	D	Y	E	R	Q	C	G	W	T	W	D	P	I	Y	K	K	I	G	I	S	F	T	A	T	E
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	G	T	I	V	P	K	G	M	E	D	Y	W	L	R	P	I	R	F	Y	E	S	E	R	R	N	F	L	G	T	L	F	S	E	G	G	L	P	F	R	L	L	K	E	S	D	S	R	F	L	A	V	F	S	R	I	L	G	Q	Y
Secondary structure
SS confidence
Disorder																									?	?																			?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	Q	A	K	Q	S	G	F	S	A	L	S	L	A	R	A	V	I	E	K	S	A	L	P	T	V	F	S	E	D	T	S	V	E	L	I	S	H	M	A	D	N	L	N	S	L	V	L	T	H	N	L	I	N	H	K	E	P	V	Q
Secondary structure
SS confidence
Disorder				?	?	?	?																																													?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	L	E	K	V	H	P	T	W	R	S	E	F	P	I	P	L	D	D	E	T	G	T	H	F	L	N	G	L	L	C	A	A	S	V	E	A	K	P	R	L	Q	K	N	K	S	T	R	C	Q	F	Y	W	S	E	K	H	P	D	E
Secondary structure
SS confidence
Disorder								?																													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	R	V	I	V	S	L	P	D	E	V	S	F	P	V	T	S	E	P	S	T	T	R	F	E	L	A	I	C	E	D	G	E	E	V	S	G	L	G	P	A	Y	A	S	L	E	N	R	Q	A	T	V	R	L	R	K	S	E	V	R
Secondary structure
SS confidence
Disorder									?		?	?	?	?	?	?	?	?	?	?	?	?			?							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?							?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	G	R	Q	N	P	S	A	G	L	S	L	V	A	R	A	G	G	M	I	V	G	S	I	K	L	D	D	S	E	I	A	I	G	E	V	P	L	T	F	I	V	D	A	D	Q	W	L	L	Q	G	Q	A	S	C	S	V	R	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?		?																							?	?	?	?																			?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		D	V	L	I	V	L	P	R	D	N	S	N	V	A	G	F	D	G	Q	S	R	A	V	N	V	L	G	L	K	A	L	P	V	K	G	C	Q	D	V	T	V	T	A	N	E	T	Y	R	I	R	T	G	R	E	Q	I	S	I	G	R
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?		?	?																												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Sequence		F	A	L	N	G	K	R	A	S	W	V	C	H	P	D	E	T	F	I	G	V	P	K	V	I	S	T	L	P	D	I	Q	S	I	D	V	T	R	Y	T	C
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?															?				?				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2yuk chain A Region: 223 - 254 Aligned: 32 Modelled: 32 Confidence: 38.4% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog Phyre2 PDB 2ph5 chain A Region: 20 - 65 Aligned: 39 Modelled: 46 Confidence: 28.3% Identity: 36% PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 Phyre2 PDB 1lnl chain A domain 2 Region: 361 - 402 Aligned: 39 Modelled: 42 Confidence: 21.0% Identity: 21% Fold: C-terminal domain of mollusc hemocyanin Superfamily: C-terminal domain of mollusc hemocyanin Family: C-terminal domain of mollusc hemocyanin Phyre2 PDB 1qnt chain A domain 2 Region: 27 - 37 Aligned: 11 Modelled: 11 Confidence: 19.6% Identity: 36% Fold: Ribonuclease H-like motif Superfamily: Methylated DNA-protein cysteine methyltransferase domain Family: Methylated DNA-protein cysteine methyltransferase domain Phyre2 PDB 1iwp chain G Region: 52 - 96 Aligned: 38 Modelled: 45 Confidence: 15.6% Identity: 18% Fold: Open three-helical up-and-down bundle Superfamily: Diol dehydratase, gamma subunit Family: Diol dehydratase, gamma subunit Phyre2 PDB 1eex chain G Region: 52 - 96 Aligned: 38 Modelled: 45 Confidence: 15.6% Identity: 21% Fold: Open three-helical up-and-down bundle Superfamily: Diol dehydratase, gamma subunit Family: Diol dehydratase, gamma subunit Phyre2 PDB 1uc5 chain M Region: 52 - 96 Aligned: 38 Modelled: 45 Confidence: 15.6% Identity: 21% PDB header:lyase Chain: M: PDB Molecule:diol dehydrase gamma subunit; PDBTitle: structure of diol dehydratase complexed with (r)-1,2-2 propanediol Phyre2 PDB 2wbq chain A Region: 47 - 91 Aligned: 45 Modelled: 45 Confidence: 15.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine Phyre2 PDB 2al1 chain A domain 1 Region: 217 - 259 Aligned: 38 Modelled: 43 Confidence: 14.9% Identity: 24% Fold: TIM beta/alpha-barrel Superfamily: Enolase C-terminal domain-like Family: Enolase Phyre2 PDB 1k1f chain A Region: 237 - 254 Aligned: 14 Modelled: 18 Confidence: 14.8% Identity: 43% Fold: Bcr-Abl oncoprotein oligomerization domain Superfamily: Bcr-Abl oncoprotein oligomerization domain Family: Bcr-Abl oncoprotein oligomerization domain Phyre2 PDB 2blc chain A Region: 154 - 172 Aligned: 19 Modelled: 19 Confidence: 14.3% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase-thymidylate synthase; PDBTitle: sp21 double mutant p. vivax dihydrofolate reductase in2 complex with des-chloropyrimethamine Phyre2 PDB 2y94 chain C Region: 209 - 223 Aligned: 15 Modelled: 15 Confidence: 14.3% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk Phyre2 PDB 1bg3 chain A domain 1 Region: 201 - 241 Aligned: 41 Modelled: 41 Confidence: 13.9% Identity: 22% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Hexokinase Phyre2 PDB 1j3k chain A Region: 154 - 177 Aligned: 19 Modelled: 24 Confidence: 13.5% Identity: 26% Fold: Dihydrofolate reductase-like Superfamily: Dihydrofolate reductase-like Family: Dihydrofolate reductases Phyre2 PDB 3dg8 chain B Region: 154 - 177 Aligned: 19 Modelled: 24 Confidence: 13.4% Identity: 26% PDB header:oxidoreductase, transferase Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump Phyre2 PDB 1bdg chain A domain 1 Region: 201 - 241 Aligned: 41 Modelled: 41 Confidence: 12.9% Identity: 15% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Hexokinase Phyre2 PDB 1js8 chain A domain 2 Region: 361 - 402 Aligned: 39 Modelled: 42 Confidence: 12.7% Identity: 15% Fold: C-terminal domain of mollusc hemocyanin Superfamily: C-terminal domain of mollusc hemocyanin Family: C-terminal domain of mollusc hemocyanin Phyre2 PDB 3lsg chain D Region: 89 - 178 Aligned: 84 Modelled: 85 Confidence: 12.5% Identity: 14% PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 Phyre2 PDB 2r6f chain A Region: 153 - 190 Aligned: 38 Modelled: 38 Confidence: 12.3% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra Phyre2 PDB 2l1n chain A Region: 243 - 258 Aligned: 16 Modelled: 16 Confidence: 11.4% Identity: 44% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 Phyre2 1 c2yukA_ 2 c2ph5A_ 3 d1lnla2 4 d1qnta2 5 d1iwpg_ 6 d1eexg_ 7 c1uc5M_ 8 c2wbqA_ 9 d2al1a1 10 d1k1fa_ 11 c2blcA_ 12 c2y94C_ 13 d1bg3a1 14 d1j3ka_ 15 c3dg8B_ 16 d1bdga1 17 d1js8a2 18 c3lsgD_ 19 c2r6fA_ 20 c2l1nA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2yukA_ 38.4 22 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 2 c2ph5A_ 28.3 36 PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 3 d1lnla2 21.0 21 Fold:C-terminal domain of mollusc hemocyanin Superfamily:C-terminal domain of mollusc hemocyanin Family:C-terminal domain of mollusc hemocyanin 4 d1qnta2 19.6 36 Fold:Ribonuclease H-like motif Superfamily:Methylated DNA-protein cysteine methyltransferase domain Family:Methylated DNA-protein cysteine methyltransferase domain 5 d1iwpg_ 15.6 18 Fold:Open three-helical up-and-down bundle Superfamily:Diol dehydratase, gamma subunit Family:Diol dehydratase, gamma subunit 6 d1eexg_ 15.6 21 Fold:Open three-helical up-and-down bundle Superfamily:Diol dehydratase, gamma subunit Family:Diol dehydratase, gamma subunit 7 c1uc5M_ 15.6 21 PDB header:lyase Chain: M: PDB Molecule:diol dehydrase gamma subunit; PDBTitle: structure of diol dehydratase complexed with (r)-1,2-2 propanediol 8 c2wbqA_ 15.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 9 d2al1a1 14.9 24 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 10 d1k1fa_ 14.8 43 Fold:Bcr-Abl oncoprotein oligomerization domain Superfamily:Bcr-Abl oncoprotein oligomerization domain Family:Bcr-Abl oncoprotein oligomerization domain 11 c2blcA_ 14.3 26 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase-thymidylate synthase; PDBTitle: sp21 double mutant p. vivax dihydrofolate reductase in2 complex with des-chloropyrimethamine 12 c2y94C_ 14.3 13 PDB header:transferase Chain: C: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk 13 d1bg3a1 13.9 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 14 d1j3ka_ 13.5 26 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 15 c3dg8B_ 13.4 26 PDB header:oxidoreductase, transferase Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump 16 d1bdga1 12.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 17 d1js8a2 12.7 15 Fold:C-terminal domain of mollusc hemocyanin Superfamily:C-terminal domain of mollusc hemocyanin Family:C-terminal domain of mollusc hemocyanin 18 c3lsgD_ 12.5 14 PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 19 c2r6fA_ 12.3 18 PDB header:hydrolase Chain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra 20 c2l1nA_ 11.4 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 21 c2vbeA_ not modelled 10.8 16 PDB header:viral protein Chain: A: PDB Molecule:tailspike-protein; PDBTitle: tailspike protein of bacteriophage sf6 22 c3pmmA_ not modelled 10.3 29 PDB header:hydrolase Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 23 d1pdza1 not modelled 9.9 13 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 24 c2j4tB_ not modelled 9.7 27 PDB header:hydrolase Chain: B: PDB Molecule:angiogenin-4; PDBTitle: biological and structural features of murine angiogenin-4,2 an angiogenic protein 25 c2kjgA_ not modelled 9.6 14 PDB header:metal binding protein Chain: A: PDB Molecule:archaeal protein sso6904; PDBTitle: solution structure of an archaeal protein sso6904 from2 hyperthermophilic sulfolobus solfataricus 26 d1t44g_ not modelled 9.5 15 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 27 c3cuoB_ not modelled 9.4 27 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli 28 c1skhA_ not modelled 9.1 50 PDB header:unknown function Chain: A: PDB Molecule:major prion protein 2; PDBTitle: n-terminal (1-30) of bovine prion protein 29 d1czan1 not modelled 9.1 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 30 c2vq8A_ not modelled 9.0 36 PDB header:hydrolase Chain: A: PDB Molecule:rnase zf-1a; PDBTitle: rnase zf-1a 31 c2lbbA_ not modelled 9.0 38 PDB header:protein binding Chain: A: PDB Molecule:acyl coa binding protein; PDBTitle: solution structure of acyl coa binding protein from babesia bovis t2bo 32 c3cw1A_ not modelled 8.8 24 PDB header:splicing Chain: A: PDB Molecule:small nuclear ribonucleoprotein-associated proteins b and PDBTitle: crystal structure of human spliceosomal u1 snrnp 33 d1l6sa_ not modelled 8.8 26 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 34 c3ixzB_ not modelled 8.8 8 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 35 c2w7nA_ not modelled 8.4 20 PDB header:transcription/dna Chain: A: PDB Molecule:trfb transcriptional repressor protein; PDBTitle: crystal structure of kora bound to operator dna: insight2 into repressor cooperation in rp4 gene regulation 36 d1bg3a3 not modelled 8.3 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 37 d1j72a1 not modelled 8.2 19 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 38 d1dkua1 not modelled 8.1 26 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 39 c3ljeA_ not modelled 8.0 27 PDB header:hydrolase Chain: A: PDB Molecule:zebrafish rnase5; PDBTitle: the x-ray structure of zebrafish rnase5 40 d1gv7a_ not modelled 7.9 45 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 41 c3l6wB_ not modelled 7.9 15 PDB header:oxygen binding Chain: B: PDB Molecule:hemocyanin 1; PDBTitle: structure of the collar functional unit (klh1-h) of keyhole2 limpet hemocyanin 42 d1m58a_ not modelled 7.9 20 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 43 c2vq9A_ not modelled 7.8 27 PDB header:hydrolase Chain: A: PDB Molecule:rnase 1; PDBTitle: rnase zf-3e 44 d1oj8a_ not modelled 7.7 20 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 45 c2p6zA_ not modelled 7.6 13 PDB header:hydrolase Chain: A: PDB Molecule:recombinant amphinase-2; PDBTitle: enzymatic and structural characterisation of amphinase, a2 novel cytotoxic ribonuclease from rana pipiens oocytes 46 d1m07a_ not modelled 7.6 13 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 47 d1m5ha1 not modelled 7.5 35 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 48 d1e0na_ not modelled 7.5 83 Fold:WW domain-like Superfamily:WW domain Family:WW domain 49 d1onca_ not modelled 7.5 13 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 50 d1czan3 not modelled 7.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 51 d1d0na4 not modelled 7.2 14 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 52 c2jpiA_ not modelled 7.2 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa 53 d1k59a_ not modelled 7.1 45 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 54 c3pgwB_ not modelled 7.1 24 PDB header:splicing/dna/rna Chain: B: PDB Molecule:sm b; PDBTitle: crystal structure of human u1 snrnp 55 d3buxb1 not modelled 7.0 12 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 56 d1un3a_ not modelled 6.9 45 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 57 d1v4sa1 not modelled 6.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 58 d1agia_ not modelled 6.9 36 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 59 d2akza1 not modelled 6.8 13 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 60 c3obkH_ not modelled 6.7 30 PDB header:lyase Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase; PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen 61 d1kvza_ not modelled 6.7 20 Fold:RNase A-like Superfamily:RNase A-like Family:Ribonuclease A-like 62 d2fug71 not modelled 6.5 24 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Nqo15-like 63 c2zpoA_ not modelled 6.3 36 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: crystal structure of green turtle egg white ribonuclease 64 c3oioA_ not modelled 6.1 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum 65 c2vefB_ not modelled 5.9 20 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 66 d1nrja_ not modelled 5.9 25 Fold:Profilin-like Superfamily:SNARE-like Family:SRP alpha N-terminal domain-like 67 c2k9sA_ not modelled 5.8 13 PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac 68 c3mklB_ not modelled 5.7 17 PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 69 d1iyxa1 not modelled 5.7 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 70 d2hkja2 not modelled 5.6 21 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 71 d2ebfx3 not modelled 5.6 36 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:PMT C-terminal domain like 72 d1rkea1 not modelled 5.6 25 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 73 d5ruba1 not modelled 5.6 23 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 74 d1w6ta1 not modelled 5.5 19 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 75 c3n9tA_ not modelled 5.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:pnpc; PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4 76 d1qo7a_ not modelled 5.3 15 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase 77 d1hbka_ not modelled 5.2 23 Fold:Acyl-CoA binding protein-like Superfamily:Acyl-CoA binding protein Family:Acyl-CoA binding protein 78 c2copA_ not modelled 5.1 25 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coenzyme a binding domain containing 6; PDBTitle: solution structure of rsgi ruh-040, an acbp domain from2 human cdna 79 c2k29A_ not modelled 5.1 29 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 80 d2qn6b1 not modelled 5.1 16 Fold:Ferredoxin-like Superfamily:eIF-2-alpha, C-terminal domain Family:eIF-2-alpha, C-terminal domain 81 c2mltA_ not modelled 5.0 32 PDB header:toxin (hemolytic polypeptide) Chain: A: PDB Molecule:melittin; PDBTitle: melittin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0