Job Description P76129 Confidence 100.00% Date Thu Jan 5 12:19:21 GMT 2012 Rank 1 Aligned Residues 412 % Identity 25% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		A	A	L	A	L	E	Q	E	K	S	R	Q	H	I	E	Q	L	I	Q	F	D	P	M	T	G	L	P	N	R	N	N	L	H	N	Y	L	D	D	L	V	.	.	.	D	K	A	V	S	P	V	V	Y	L	I	G	V	D	H	I	Q	D	V	I	D	S	L	G	Y	A	W	A	D	Q	A	L	L	E	V	V	N
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.
Template Conservation
Template Sequence		A	A	L	F	Q	E	Q	A	E	R	S	E	K	L	R	T	E	S	Y	Q	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	P	E	Q	A	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T	D	E	L	L	K	A	V	G	E
Template Known Secondary structure									T	T											B		T	T	T	S	S														T	T		T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		436	.	.	.	440	.					.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.		.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure								.	.	.	.																																																										.
Query SS confidence								.	.	.	.																																																										.
Query Sequence		R	F	R	E	K	L	.	.	.	.	K	P	D	Q	Y	L	C	R	I	E	G	T	Q	F	V	L	V	S	L	E	N	D	V	S	N	I	T	Q	I	A	D	E	L	R	N	V	V	S	K	P	I	M	I	D	D	K	P	F	P	L	T	L	S	I	G	I	S	.	Y	D	L	G	K	N	R	D	Y	L	L	S
Query Conservation								.	.	.	.																																																										.
Alig confidence								.	.	.	.																																																										.
Template Conservation
Template Sequence		Q	L	S	R	E	C	A	K	Y	P	E	T	Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	H	G	D	S	P	Q	A	V	L	S
Template Known Secondary structure								S	S		S	T	T	T	T							T	T								T																		T						T	S		S		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.		.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		T	A	H	N	A	M	D	Y	I	R	K	N	G	G	N	G	W	Q	F	F	S	P	A	M	N	E	M	V	K	E	R	L	V	L	G	A	A	L	K	E	A	I	S	N	N	Q	L	K	L	V	Y	Q	P	Q	I	F	A	E	T	G	E	.	L	Y	G	I	E	A	L	A	R	W	H	D	P	L	H	G	H	V
Query Conservation																																																															.
Alig confidence																									.	.	.	.	.	.																																	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		L	G	D	Q	A	L	A	Q	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	D	.	.	.	.	.	.	D	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I
Template Known Secondary structure												S		S	S		S								.	.	.	.	.	.	S														T	T												S	S		T	T														T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.							.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	S	R	F	I	P	L	A	E	E	I	G	E	I	E	N	I	G	R	W	V	I	A	E	A	C	R	Q	L	A	E	W	R	S	Q	N	I	H	I	P	A	L	S	V	N	L	S	A	L	H	F	R	S	N	Q	L	P	N	Q	V	S	D	A	M	H	A	W	G	I	D	G	H	Q	L	T	V	E	I	T
Query Conservation
Alig confidence																																			.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	H	.	.	.	.	.	.	E	E	S	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G
Template Known Secondary structure												T	T	T																	G	G	G		.	.	.	.	.	.															S	S													T	G	G	G	T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.							.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	M	M	M	E	H	D	T	E	I	F	K	R	I	Q	I	L	R	D	M	G	V	G	L	S	V	D	D	F	G	T	G	F	S	G	L	S	R	L	V	S	L	P	V	T	E	I	K	I	D	K	S	F	V	D	R	C	L	T	E	K	R	I	L	A	L	L	E	A	I	T	S	I	G	Q	S	L	N	L
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		E	E	Q	L	P	E	Q	.	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L
Template Known Secondary structure		G	G	G					.													T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		534	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	V	A	E	G	V	E	T	K	E	Q	F	E	M	L	R	K	I	H	C	R	V	I	Q	G	Y	F	F	S	R	P	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	I	A	E	R	V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P
Template Known Secondary structure										S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.