 |
Job Description | P76129 | Confidence | 87.59% | Date | Thu Jan 5 12:19:21 GMT 2012 |
Rank | 146 | Aligned Residues | 103 |
% Identity | 17% | Template | c3kruC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; |
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
|
Resolution | 1.60 Å |
|
 |
  |   |
672 | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | M | M | E | H | D | T | E | I | F | K | R | I | Q | I | L | R | D | . |
. |
. |
. |
. |
. |
. |
M | G | V | G | L | S | V | D | D | F | G | T | G | F | S | G | L | S | R | L | V | S | L | P | . |
. |
. |
. |
. |
. |
V | T | E | I | K | I | D | K | S | F | V | D | R | C | L | T | E | K | R | I | L | A | L | L | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . | . |   |
|   |   |   |   |   |
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |   |   | . | . | . | . | . | . |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|   |   |   |
|
|
|   |
|
|
|   |
|
|
|   |
|   |   |
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
S | I | E | N | R | A | R | F | L | I | E | V | I | D | E | V | R | K | N | W | P | E | N | K | P | I | F | V | R | V | S | A | D | D | Y | M | E | G | G | I | N | I | D | M | M | V | E | Y | I | N | M | I | K | D | K | V | D | L | I | D | V | S | S | G | G | L | L | N | V | D | I | N | L | Y | P | G | Y | Q | V | K |
Template Known Secondary structure |   |
S |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
| T | T | S |
|  |  |  |  |  |  |
|
|
| S | S | T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  |
|
|
| S | S |
|
|
|
|
|
|
| T | T | T | T |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . |
  |
  |   |
739 | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | |
. | . | . | . | 760 | . | . | . | . | . | . | . | . | . | |
770 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Query Sequence |   |
A | I | T | S | I | G | Q | S | L | N | L | T | V | V | A | E | G | . |
V | E | T | K | E | Q | F | E | M | L | R | K | I | H | . |
C | R | V | I | Q |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
| . |
|
|   |   |   |   |   |   |   |
|   |   |   |
| . |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |   |   |
|
|
|
|   |   |
|
|
|   |   |   |
|   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
Template Sequence |   |
Y | A | E | T | I | K | K | R | C | N | I | K | T | S | A | V | G | L | I | T | T | Q | E | L | A | E | E | I | L | S | N | E | R | A | D | L | V | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T | S |
| S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
268 | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|