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Job DescriptionP76129
Confidence99.86%DateThu Jan 5 12:19:21 GMT 2012
Rank26Aligned Residues218
% Identity13%Templatec3gecA_
PDB info PDB header:circadian clock proteinChain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of a tandem pas domain fragment of2 drosophila period
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWT
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Template Sequence  CCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQI. . . . . . . . . TTGISTFCVMLRRYRGSYEPF
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   241........250.........260.........270.........280.........290 .........300.........310.
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  RFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEASGMQPDT
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Template Sequence  RLGL. . . TFREMLLVICATPIKSSYKVPD. . . . . . EILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMD
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   339340.. .......350.........360.... .....370.........380.........390.........400.........
 
   184.....190.........200.. .......210.........220.........230.... .....240.........250........
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Query Sequence  LLNIPEFPADNRIRLQQLL. . . . WKTARDQDEFLLLTRTGEKIWIKASISPVYDV. LAHLQNLVMTFSDITEERQIRQLE
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Template Sequence  FYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFE
Template Known Secondary structure  S
GGGSSS


B



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   427..430.........440.........450.........460.........470.........480.........490.........500......
 
   259
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Query Sequence  G
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Template Sequence  A
Template Known Secondary structure 
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Template SS confidence 
   507
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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