Job Description P76129 Confidence 99.83% Date Thu Jan 5 12:19:21 GMT 2012 Rank 27 Aligned Residues 211 % Identity 11% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	L	I	N	E	N	D	E	V	M	F	F	N	P	A	A	E	K	L	W	G	Y	K	R	E	E	V	I	G	N	N	I	D	M	L	I	P	R	D	L	R	P	A	H	P	E	Y	I	R	H	N	R	E	G	G	K	A	R	V	E	G	M	S	R	E	L	Q	L	E	K	K	D	G	S	K	I	W	T
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Sequence		A	V	A	V	S	L	V	S	G	K	I	L	Y	I	S	N	Q	V	.	.	.	.	.	.	.	.	.	A	S	I	D	A	K	F	V	E	F	L	A	P	H	D	V	S	V	F	H	S	Y	T	T	P	Y	K	L	P	M	E	E	.	.	.	.	.	.	K	S	F	F	C	R	V	S	V	G	R	Y	Q	P	F
Template Known Secondary structure							S	S	S										S	.	.	.	.	.	.	.	.	.	S						G	G	G	T	B		G	G	G								T	S	T	T	T						.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.										210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	A	L	S	K	V	S	A	E	G	K	V	Y	Y	L	A	L	V	R	D	A	S	V	E	M	A	Q	K	E	Q	T	R	Q	L	I	I	A	V	D	H	L	D	R	P	V	I	V	L	D	P	E	R	H	I	V	Q	C	N	R	A	F	T	E	M	F	G	Y	C	I	S	E	A	S	G	M	Q	P	D	T
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		R	M	T	P	Y	L	V	K	E	S	Q	L	C	C	L	L	L	A	E	R	V	H	S	G	Y	E	A	P	R	I	P	P	E	K	.	.	.	.	.	.	.	.	R	I	F	T	T	T	H	T	P	N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P	V	L	V
Template Known Secondary structure																					B				T	T	S	T	T				G	G	G	.	.	.	.	.	.	.	.									T	T	S	B						T	T						S							T	T	S	B	T	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.									.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.																														.
Query SS confidence																										.	.																														.
Query Sequence		L	L	N	I	P	E	F	P	A	D	N	R	I	R	L	Q	Q	L	L	W	K	T	A	R	.	.	D	Q	D	E	F	L	L	L	T	R	T	G	E	K	I	W	I	K	A	S	I	S	P	V	Y	D	V	L	A	.	H	L	Q	N	L	V	M	T	F	S	D	I	T	E	E	R	Q	I	R	Q	L	E
Query Conservation																										.	.																														.
Alig confidence					.																					.	.																														.
Template Conservation					.
Template Sequence		Q	L	H	.	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L	D	T	S	W	S	S	F	I	N	P	W	S	R	K	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	D	V	F	A
Template Known Secondary structure		G	B		.	T	T	T	T	T													T	T													T	T	S															T	T	T																	S	S	S		T	T	S
Template Predicted Secondary structure					.
Template SS confidence
		367	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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