Job Description P76129 Confidence 98.83% Date Thu Jan 5 12:19:21 GMT 2012 Rank 83 Aligned Residues 125 % Identity 13% Template c3cloC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution Resolution 2.04 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																														.																												.	.	.	.	.	.	.	.
Query SS confidence																														.																												.	.	.	.	.	.	.	.
Query Sequence		K	L	T	D	A	D	N	A	A	D	G	I	F	F	P	A	L	E	Q	N	M	M	G	A	V	L	I	N	.	E	N	D	E	V	M	F	F	N	P	A	A	E	K	L	W	G	Y	K	R	E	E	V	I	G	N	N	.	.	.	.	.	.	.	.	I	D	M	L	I	P	R	D	L	R	P	A	H	P	E	Y
Query Conservation																														.																												.	.	.	.	.	.	.	.
Alig confidence																														.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	D	G	I	V	E	Q	H	Q	Q	F	V	R	S	L	T	E	V	N	G	G	C	A	V	I	S	D	L	S	N	R	K	S	Y	V	T	V	H	P	W	A	N	F	L	G	L	T	P	E	E	A	A	L	S	V	I	D	S	X	D	E	D	C	I	Y	R	R	I	H	P	E	D	L	V	E	K	R	L	X
Template Known Secondary structure																						S								T	T	T	T								T	T		G	G	G												T	T				T					T	T	B
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		73	.	.	.	.	.							.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																																			.	.	.
Query SS confidence								.	.	.	.	.	.																																			.	.	.
Query Sequence		I	R	H	N	R	E	.	.	.	.	.	.	G	G	K	A	R	V	E	G	M	S	R	E	L	Q	L	E	K	K	D	G	S	K	I	W	T	R	F	A	L	S	K	V	S	A	.	.	.	E	G	K	V	Y	Y	L	A	L	V	R	D	A	S
Query Conservation								.	.	.	.	.	.																																			.	.	.
Alig confidence								.	.	.	.	.	.																																			.	.	.
Template Conservation
Template Sequence		E	Y	K	F	F	Q	K	T	F	S	X	S	P	G	E	R	L	K	Y	R	G	R	C	R	L	R	X	X	N	E	K	G	V	Y	Q	Y	I	D	N	L	V	Q	I	X	Q	N	T	P	A	G	N	V	W	L	I	F	C	L	Y	S	L	S	A
Template Known Secondary structure											T	S						T	T												T	T	S																T	T	S													S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions