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Job DescriptionP76129
Confidence100.00%DateThu Jan 5 12:19:21 GMT 2012
Rank7Aligned Residues228
% Identity20%Templatec2w27A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   547..550.........560.........570.........580.........590.........600.........610.........620......
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Query Sequence  ALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQN
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Template Sequence  PLDILTNIDDVLPYYQAIFSAEEQKVVGYEVLGRILADSEIQSLGPFFLDAGIPEEYKLEVDNRIIRQALDRFLEA. . . .
Template Known Secondary structure  TGGGTTT
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   4.....10.........20.........30.........40.........50.........60.........70.........
 
   627..630.........640.. .......650.........660.........670.........680.........690.........700....
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Query Sequence  IHIPALSVNLSALHFR. . SNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFS
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Template Sequence  DSDLLIFMNQDANLLMLDHGESFLELLKEYEAKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTYGIKIAVDNIGKESS
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   705....710.........720.........730.........740.........750.........760.........770.........780...
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Query Sequence  GLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLP
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Template Sequence  NLDRIALLSPDLLKIDLQALSPS. . . . . YEHVLYSISLLARKIGAALLYEDIEANFQLQYAWRNGGRYFQGYYLVSPSE
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   160.........170.........180.. .......190.........200.........210.........220.........230...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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