 |
Job Description | P76129 | Confidence | 99.70% | Date | Thu Jan 5 12:19:21 GMT 2012 |
Rank | 33 | Aligned Residues | 114 |
% Identity | 18% | Template | c2r78D_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:sensor protein; |
PDBTitle: crystal structure of a domain of the sensory box sensor2 histidine kinase/response regulator from geobacter3 sulfurreducens
|
Resolution | 1.60 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | D | A | D | N | A | A | D | G | I | F | F | P | A | L | E | Q | N | M | M | G | A | V | L | I | N | E | N | D | E | V | M | F | F | N | P | A | A | E | K | L | W | G | Y | K | R | E | E | V | I | G | N | N | I | D | M | L | I | P | R | D | L | R | P | A | H | P | E | Y | I | R | H | N | R | E | G | G | K | A | R |
Query Conservation |   |
  |
|
|   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |
|
|   |
|   |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |
|   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
|   |   |
|   |   |
|
|   |
|   |
|   |
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |
Template Sequence |   |
T | E | N | L | Y | F | Q | S | N | A | Y | R | A | L | F | E | H | A | I | D | G | I | F | I | X | D | A | E | G | H | Y | L | D | V | N | P | A | I | C | S | A | I | G | Y | T | R | D | E | F | L | A | L | D | W | G | V | L | S | R | G | V | D | S | G | W | A | A | A | S | L | A | R | I | V | G | G | . |
. |
. |
. |
Template Known Secondary structure |   |
T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |
| T | T |
| B |  |  |  |  |
|  |  |  |  |  |  |  | T |
|
|  |  |  |  | T | T |
| B | T | T | T | T | T | T |
| S | T | T | S |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
|
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | G | M | S | R | E | L | Q | L | E | K | K | D | G | S | K | I | W | T | R | F | A | L | S | K | V | S | A | E | G | K | V | Y | Y | L | A | L | V | R | D | A |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |
|   |   | . | . | . |
|   |   |
|   |   |
|
|
Template Sequence |   |
. |
E | P | L | R | E | E | R | T | V | W | T | R | N | G | D | Q | L | T | V | E | L | S | A | H | L | L | P | D | G | K | . |
. |
. |
I | L | G | I | A | R | D | V |
Template Known Secondary structure |   |
. |
|
|  |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |
| T | T | S |
| . | . | . |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
. |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . | . |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
|
. | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|