Job Description P76129 Confidence 99.76% Date Thu Jan 5 12:19:21 GMT 2012 Rank 29 Aligned Residues 230 % Identity 10% Template c1wa9A_ PDB info PDB header:circadian rhythm Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period Resolution 3.15 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	L	I	N	E	N	D	E	V	M	F	F	N	P	A	A	E	K	L	W	G	Y	K	R	E	E	V	I	G	N	N	I	D	M	L	I	P	R	D	L	R	P	A	H	P	E	Y	I	R	H	N	R	E	G	G	K	A	R	V	E	G	M	S	R	E	L	Q	L	E	K	K	D	G	S	K	I	W	T
Query Conservation
Alig confidence																																													.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		C	C	V	I	S	M	H	D	G	I	V	L	Y	T	T	P	S	I	T	D	V	L	G	Y	P	R	D	M	W	L	G	R	S	F	I	D	F	V	H	L	K	D	R	.	.	.	.	A	T	F	A	S	Q	I	T	T	G	I	A	K	S	T	F	C	V	M	L	R	R	Y	R	G	L	K	S	G	G	F	G	V
Template Known Secondary structure							T	T	T		B						T	T									T	T	S	S	T	T	S	B	G	G	G	G	B		T	T	T		.	.	.	.							T	T	S														S				S	S			S	S	S
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	A	L	S	K	V	S	A	E	G	K	V	Y	Y	L	A	L	V	R	D	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	M	A	Q	K	E	Q	T	R	Q	L	I	I	A	V	D	H	L	D	R	P	V	I	V	L	D	P	E	R	H	I	V	Q	C	N	R	A	F	T	E	M
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.
Template Sequence		I	G	R	P	V	S	Y	E	P	F	R	.	.	.	L	G	L	T	F	R	E	A	P	E	E	A	R	S	N	G	T	N	M	L	L	V	I	C	A	T	P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	A	I	R	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A
Template Known Secondary structure													.	.	.					B											S															S			S	T	T		B			T	T	S									T	T		B						G	G	G
Template Predicted Secondary structure													.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		F	G	Y	C	I	S	E	A	S	G	M	Q	P	D	T	L	L	N	I	P	E	F	P	A	D	N	R	I	R	L	Q	Q	L	L	W	K	T	A	R	.	.	.	.	D	Q	D	E	F	L	L	L	T	R	T	G	E	K	I	W	I	K	A	S	I	S	P	V	Y	D	V	L	A	H	L	Q	N	L	V	M	T
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.
Template Conservation
Template Sequence		L	G	Y	L	P	Q	D	L	I	G	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A	G	A	S	F	C	S	K	P	Y	R	F	L	I	Q	N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G
Template Known Secondary structure										T	T	S	B	G	G	G	G	B		T	T	T															T	T	S	T	T													T	T	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	D	I	T	E	E	R	Q	I	R	Q	L	E	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	H	R	V	F	Q	G	P	K	Q	C	N	V	F	E	A
Template Known Secondary structure										S	S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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