Job Description P63340 Confidence 76.36% Date Thu Jan 5 12:08:05 GMT 2012 Rank 8 Aligned Residues 355 % Identity 12% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		G	A	G	T	L	F	L	P	I	Q	L	G	S	A	G	A	V	V	L	F	I	T	A	L	V	A	W	P	L	T	Y	W	P	H	K	A	L	C	Q	F	I	L	S	S	K	T	S	A	G	E	G	I	T	G	A	V	T	H	Y	Y	G	K	K	.	.	.	.	.	I	G	N	L	I	T	T	L	Y	F	I	A
Query Conservation																																																																	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	.	.	.	.	.	.	.	.	.	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A
Template Known Secondary structure															T	S																			.	.	.	.	.	.	.	.	.		T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.										.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		F	F	V	V	V	L	I	Y	A	V	A	I	T	N	S	L	T	E	Q	L	A	K	H	M	V	I	D	L	R	I	R	M	L	V	S	L	G	.	.	V	V	L	I	L	N	L	I	F	L	M	G	R	H	A	T	I	R	V	M	G	F	L	V	F	P	L	I	A	Y	F	L	F	L	S	I	Y	L	V	G	S
Query Conservation																																							.	.
Alig confidence																																							.	.
Template Conservation
Template Sequence		L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A
Template Known Secondary structure																						T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		175														.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.
Query Sequence		W	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	D	L	L	T	T	Q	V	E	F	N	Q	N	T	L	H	Q	I	W	I	S	I	P	V	M	V	F	A	F	S	H	T	P	I	I	S	T	F	A	I	D	R	R	E	K	Y	G	E	H	A	M	D	K	C	K	K	I	.	M	K	V	A	Y	L	I
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																														.																													.
Template Conservation																																													.
Template Sequence		S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	.	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S
Template Known Secondary structure																								T					S	S								T							.					T											T		S	S
Template Predicted Secondary structure																																													.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	I	S	V	L	F	F	V	F	S	C	L	L	S	I	P	P	S	Y	I	E	A	A	K	E	E	G	V	T	I	L	S	A	L	S	M	L	P	N	A	P	A	W	L	S	I	S	G	I	I	V	A	V	V	A	M	S	K	S	F	L	G	T	Y	F	G	V	I	E	G	A	T	E	V	V	K	T	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V
Template Known Secondary structure																			T	T	S								G	G	G												T	S	S	S	T	T																												T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	V	G	V	K	K	S	R	A	F	N	R	A	L	S	I	M	L	V	S	L	I	T	F	I	V	C	C	I	N	P	N	A	I	S	M	I	Y	A	I	S	G	P	L	I	A	M	I	L	F	I	M	P	T	L	S	T	Y	L	I	P	A	L	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure		S	S	S		S	S		S	T	T																				S	S																																T
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions