Job Description P63340 Confidence 99.13% Date Thu Jan 5 12:08:05 GMT 2012 Rank 4 Aligned Residues 392 % Identity 10% Template c2xq2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Resolution 2.73 Å

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		5	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure										.	.													.
Query SS confidence										.	.													.
Query Sequence		W	S	K	E	E	T	L	W	.	.	S	F	A	L	Y	G	T	A	V	G	A	G	.	T	L	F	L	P	I	Q	L	G	S	A	G	A	V	V	L	F	I	T	A	L	V	A	W	P	L	T	Y	W	P	H	K	A	L	C	Q	F	I	L	S	S	K	T	S	A	G	E	G	I	T	G	A	V	T	H	Y	Y
Query Conservation										.	.													.
Alig confidence										.	.													.														.																							.	.	.
Template Conservation																																						.																							.	.	.
Template Sequence		L	W	V	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	.	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	.	.	.	I	F	I	E	K	G	I	Y	T	I	P	E	F	V	E	K	R	F
Template Known Secondary structure			T														G	G	G	S	S														T		G	.	G	G	G																T				.	.	.					T	T			S									T
Template Predicted Secondary structure																																						.																							.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		G	K	K	I	G	N	L	I	T	T	L	Y	F	I	A	F	F	V	V	.	V	L	I	Y	A	V	A	I	T	N	S	L	T	E	Q	L	A	K	H	M	V	I	D	L	R	I	R	M	L	V	S	L	G	V	V	L	I	L	N	L	I	F	L	M	G	R	H	A	T	I	R	V	M	G	F	L	V	F	P	L
Query Conservation																					.
Alig confidence																					.																		.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	.	.	.	.	.	.	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	Y	G	G	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G
Template Known Secondary structure																				T																			.	.	.	.	.	.																				T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.							160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	Y	F	L	F	L	S	I	Y	L	V	G	S	W	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	T	T	Q	V	E	F	N	Q	N	T	L	H	Q	I	W	I	S	I	P	V	M	V	F	A	F	S	H	T	P	I	I	S	T	F	A	I	D	R	R	E	K	Y	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	K	S
Template Known Secondary structure															G	G	G														G	G	G	S		S	S			S	S	S	G	G	G	G	T	S		T	T					S	T										T	T	T		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		E	H	A	M	D	K	C	K	K	I	M	K	V	A	Y	L	I	I	C	I	S	V	L	F	F	V	F	S	C	L	L	S	I	P	P	S	Y	I	E	A	.	.	.	.	.	A	K	E	E	G	V	T	I	L	S	A	L	S	M	L	P	N	A	P	A	W	L	S	I	S	G	I	I	V	A	V	V	A	M	S
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.
Template Conservation
Template Sequence		V	S	E	A	Q	K	G	I	V	F	A	A	F	L	A	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S
Template Known Secondary structure																T	T	T						T											T														S	T	B	G	G	G								T	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	F	L	G	T	Y	F	G	V	I	E	G	A	T	E	V	V	K	T	T	L	Q	Q	V	G	V	K	K	S	R	A	F	N	R	A	L	S	I	M	L	V	S	L	I	T	F	I	V	C	C	I	N	P	N	A	I	S	M	I	Y	A	I	S	G	P	L	I	A	M	I	L	F	I	M	P	T	L	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	A	L	I	A	P	M	L	G	G	I	G	Q	C	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L
Template Known Secondary structure																		T					T		S																										G	G	G	G	G	G		B											T	T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	I	P	A	L	K	P	W	R	S	I	G	N	L	I	T	L	I	V	G	I	L	C	V	S	V	M	F	F
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		G	L	F	W	K	.	.	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F
Template Known Secondary structure						T	.	.	T
Template Predicted Secondary structure							.	.
Template SS confidence
		445	.	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.