Job Description P63340 Confidence 99.88% Date Thu Jan 5 12:08:05 GMT 2012 Rank 3 Aligned Residues 391 % Identity 9% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																		.
Query SS confidence												.	.																		.
Query Sequence		N	I	W	S	K	E	E	T	L	W	.	.	S	F	A	L	Y	G	T	A	V	G	A	G	T	L	F	L	P	.	I	Q	L	G	S	A	G	A	V	V	L	F	I	T	A	L	V	A	W	P	L	T	Y	W	P	H	K	A	L	C	Q	F	I	L	S	S	K	T	S	A	G	E	G	I	T	G	A	V	T	H
Query Conservation												.	.																		.
Alig confidence												.	.																		.																																	.	.						.	.
Template Conservation																																																																.	.						.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	.	.	A	I	R	W	G	.	.	I	N	F	T	V	A	A	R	M
Template Known Secondary structure			G	G	G			B															S	T										T	T	T	S																								T			.	.						.	.							T	T	T
Template Predicted Secondary structure																																																																.	.						.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.			.	.	90	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	G	K	K	I	G	N	L	I	T	T	L	Y	F	I	A	F	F	V	V	V	L	I	Y	A	V	A	I	T	N	S	L	T	E	Q	L	A	K	H	M	V	I	D	L	R	I	R	M	L	V	S	L	G	V	V	L	I	L	N	L	I	F	L	M	G	R	H	A	T	I	R	V	M	G	F	L	V	F	P
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	.	.	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V
Template Known Secondary structure		T	S		T	T	T	T																																						.	.																		T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	Y	F	L	F	L	S	I	Y	L	V	G	S	W	Q	P	D	L	L	T	T	Q	V	E	F	N	Q	N	T	L	H	Q	I	W	I	S	I	P	V	M	V	F	A	F	S	H	T	P	I	I	S	T	F	A	I	D	R	R	E	K	Y	G	E	H	A	M	D	K	C	K	K	I	M	K	V	A	Y	L
Query Conservation
Alig confidence																																																													.
Template Conservation																																																													.
Template Sequence		L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	.	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A
Template Known Secondary structure																		T							T	T				S	S			S											T	T	T					T	T	T					T	T	.	B				T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	C	I	S	V	L	F	F	V	F	S	C	L	L	S	I	P	P	S	Y	I	E	A	A	K	E	E	G	V	T	I	L	S	A	L	S	M	L	P	N	A	P	A	W	L	S	I	S	G	I	I	V	A	V	V	A	M	S	K	S	F	L	G	T	Y	F	G	V	I	E	G	A	T	E	V	V	K	T	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V
Template Known Secondary structure																											S		S											T																				T	T						T											S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.												.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	Q	V	G	V	K	K	S	R	A	F	N	R	A	L	S	I	M	L	V	S	L	I	T	F	I	V	C	C	I	N	P	N	A	I	S	M	I	Y	A	I	S	G	P	L	I	A	M	I	L	F	I	M	P	T	L	S	T	Y	L	I	P	A	L	K	.	.	.	.	.	.	.	.	.	.	.	P	W	R
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.
Template Sequence		F	.	.	.	.	.	.	.	.	.	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W
Template Known Secondary structure			.	.	.	.	.	.	.	.	.																T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Template SS confidence
		334										.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	G	N	L	I	T	L	I	V	G	I	L	C	V	S	V	M	F	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T
Template Known Secondary structure		T	T	B																	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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