Job Description P05459 Confidence 100.00% Date Thu Jan 5 10:58:44 GMT 2012 Rank 27 Aligned Residues 262 % Identity 24% Template c3gvxA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerate dehydrogenase related protein; PDBTitle: crystal structure of glycerate dehydrogenase related2 protein from thermoplasma acidophilum Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		M	K	I	L	V	D	E	N	M	P	Y	.	A	R	D	L	F	S	R	L	G	E	V	T	A	V	P	G	R	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	R	S	V	T	K	V	N	E	S	L	L	A	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K	Q
Query Conservation													.
Alig confidence													.											.	.	.	.																				.	.	.	.	.	.
Template Conservation																								.	.	.	.																				.	.	.	.	.	.
Template Sequence		L	D	V	Y	V	N	F	P	A	D	G	H	V	R	E	I	A	K	T	V	L	D	.	.	.	.	G	F	D	L	H	W	Y	P	D	Y	Y	D	A	E	A	Q	V	I	K	.	.	.	.	.	.	D	R	Y	V	L	G	K	R	T	K	X	I	Q	A	I	S	A	G	V	D	H	I	D	V	N	G	I	P	E
Template Known Secondary structure								S														T	T	.	.	.	.	T	S					T	T	S					S					S	.	.	.	.	.	.	S						S	S								S	S			T	T	S		G	G	G	S		T
Template Predicted Secondary structure																								.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	K	T	L
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		N	V	V	.	L	C	S	N	A	G	A	Y	S	I	S	V	A	E	H	A	F	A	L	L	L	A	H	A	K	N	I	L	E	N	N	E	L	X	K	A	G	I	F	R	Q	S	P	T	T	L	L	Y	G	K	A	L	G	I	L	G	Y	G	G	I	G	R	R	V	A	H	L	A	K	A	F	G	X	R	V	I
Template Known Secondary structure		T	S		.																									T	T										T	T											T	T									S														T
Template Predicted Secondary structure					.
Template SS confidence
		71	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	D	P	P	R	A	D	R	G	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P	L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A	V	V	D	N	T	A	L	L	T	C	L	N	E
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		A	Y	T	R	S	S	V	D	Q	N	V	D	V	I	S	E	S	P	A	D	L	F	R	Q	S	D	F	V	L	I	A	I	P	L	T	D	K	.	.	.	.	T	R	G	X	V	N	S	R	L	L	A	N	A	R	K	N	L	T	I	V	N	V	A	R	A	D	V	V	S	K	P	D	X	I	G	F	L	K	E
Template Known Secondary structure					S	S				T	T		S				S	S									S										T	T	.	.	.	.	T	T	T		B	S					T	T			T	T							S		G	G	G	B
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		G	Q	K	L	S	V	V	L	D	V	W	E	G	E	P	E	L	N	V	E	L	L	K	K	V	D	I	G	T	S	H	I	A	G	Y	.	T	L	E	G	K	A	R	G	T	T	Q	V	F	E	A	Y	S	K	F	I
Query Conservation																																					.
Alig confidence																													.								.
Template Conservation																													.
Template Sequence		R	S	D	V	W	Y	L	S	D	V	W	W	N	E	P	E	I	T	E	T	N	L	R	N	A	I	L	.	S	P	H	V	A	G	G	X	S	G	E	I	X	D	I	A	I	Q	L	A	F	E	N	V	R	N	F	F
Template Known Secondary structure			T	T						S			T	T	T	T	S			S				S	S				.			S		S	S		B	T	T	B																	T
Template Predicted Secondary structure																													.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions