 |
Job Description | P05459 | Confidence | 97.37% | Date | Thu Jan 5 10:58:44 GMT 2012 |
Rank | 223 | Aligned Residues | 63 |
% Identity | 19% | Template | c3dapB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase; |
PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline
|
Resolution | 2.20 Å |
|
 |
  |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | |
. | 140 | . | . | . | . | . | |
|
|
. | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Y | D | R | T | V | G | I | V | G | V | G | N | V | G | R | R | L | Q | A | R | L | E | A | L | . |
G | I | K | T | L | L | C | . |
. |
. |
D | P | P | R | A | D | R | G | D | E | G | D | F | R | S | L | D | E | L | V | Q | R | A | D | I | L | T | F | H | T | P |
Query Conservation |   |
|   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |
|
| . |
|   |   |
|   |   |   | . | . | . |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|   |
|   |
|   |
|   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |
|
Template Sequence |   |
M | T | N | I | R | V | A | I | V | G | Y | G | N | L | G | R | S | V | E | K | L | I | A | K | Q | P | D | M | D | L | V | G | I | F | S | R | R | A | T | L | D | T | K | T | P | V | F | D | V | A | D | V | D | K | H | A | D | D | V | D | V | L | F | L | C | M | G |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |  |  |  |  |  |  |  |  | S |
| S |
|
| S | S | S | S |
|  |  |  | G | G | G | G | G | G | G | T | T | T |
| S |  |  |  |  |
| S |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|