Job Description P05459 Confidence 100.00% Date Thu Jan 5 10:58:44 GMT 2012 Rank 24 Aligned Residues 289 % Identity 25% Template c2w2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a. Resolution 1.85 Å

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		2	.	.	.					.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.		.	.		.	.	60	.	.
Predicted Secondary structure						.	.	.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.											.			.
Query SS confidence						.	.	.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.											.			.
Query Sequence		K	I	L	V	.	.	.	.	D	E	N	M	P	Y	A	R	D	L	F	S	R	L	G	E	V	T	A	V	P	G	R	P	I	P	V	.	.	.	.	.	.	.	A	Q	L	A	D	A	D	A	L	M	V	R	S	.	.	.	.	.	.	V	T	K	V	N	E	S	L	L	A	.	G	K	.	P	I	K	F	V
Query Conservation						.	.	.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.											.			.
Alig confidence						.	.	.	.																												.	.	.	.	.	.	.														.	.	.	.	.	.											.			.
Template Conservation
Template Sequence		R	V	L	L	L	G	D	P	A	R	H	L	D	D	L	W	S	D	F	Q	Q	K	F	E	V	I	P	A	N	L	T	T	H	D	G	F	K	Q	A	L	R	E	K	R	Y	G	D	F	E	A	I	I	K	L	A	V	E	N	G	T	E	S	Y	P	W	N	A	D	L	I	S	H	L	P	S	S	L	K	V	F
Template Known Secondary structure							S	S			S	S												S																			T	T	T	T				S						S	T	T	T	T	G	G	G			B						T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																										.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K	Q	A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	L	Y	D	R
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	A	G	A	G	F	D	W	L	D	L	D	A	L	N	E	R	G	V	A	F	A	N	S	R	G	A	G	D	T	A	T	S	D	L	A	L	Y	L	I	L	S	V	F	R	L	A	S	Y	S	E	R	A	A	R	T	G	D	P	E	T	F	N	R	V	H	L	E	I	G	K	S	A	H	N	P	R	G	H
Template Known Secondary structure				S	S	S			T	T	B								T	T							T	T	T	T																		T									T	T														T	T	T				S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																				.																			.	.	.	.	.
Query SS confidence																				.																			.	.	.	.	.
Query Sequence		T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	.	E	A	L	G	I	K	T	L	L	C	D	P	P	R	A	D	R	G	.	.	.	.	.	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P	L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E
Query Conservation																				.																			.	.	.	.	.
Alig confidence																				.																			.	.	.	.	.																												.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		V	L	G	A	V	G	L	G	A	I	Q	K	E	I	A	R	K	A	V	H	G	L	G	M	K	L	V	Y	Y	D	V	A	P	A	D	A	E	T	E	K	A	L	G	A	E	R	V	D	S	L	E	E	L	A	R	R	S	D	C	V	S	V	S	V	P	Y	M	K	L	.	.	.	.	T	H	H	L	I	D	E
Template Known Secondary structure									S													T	T									S	S											T					S	S									S									S	G	G	.	.	.	.	G	T	T		B
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A	V	V	D	N	T	A	L	L	T	C	L	N	E	G	Q	K	L	S	V	V	L	D	V	W	E	G	E	P	E	L	N	V	E	L	L	K	K	V	D	.	I	G	T	S	H	I	A	G	Y	T	L	E	G	K	A	R	G	T	T	Q	V
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		A	F	F	A	A	M	K	P	G	S	R	I	V	N	T	A	R	G	P	V	I	S	Q	D	A	L	I	A	A	L	K	S	G	K	L	L	S	A	G	L	D	V	H	E	F	E	P	N	V	S	K	E	L	I	E	M	K	H	V	T	L	T	T	H	I	G	G	V	A	I	E	T	F	H	E	F	E	R	L	T
Template Known Secondary structure							S		T	T							S		G	G	G	B											T	T	S							S	S		T	T	T	T	S							T	S	S	S					S	S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		271	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		F	E	A	Y	S	K	F	I	.	G	H	E	Q	H	V	A	L	D	T	L	L	P	A	P	E
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		M	T	N	I	D	R	F	L	L	Q	G	K	P	L	L	T	P	A	G	K	V	F	A	P	S
Template Known Secondary structure											T					S	S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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