Job Description P05459 Confidence 99.92% Date Thu Jan 5 10:58:44 GMT 2012 Rank 49 Aligned Residues 242 % Identity 16% Template c2vhyB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alanine dehydrogenase; PDBTitle: crystal structure of apo l-alanine dehydrogenase from2 mycobacterium tuberculosis Resolution 2.3 Å

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		1	.	.	.	.	.		.	.	.	10											.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure								.					.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.					.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	L	V	D	.	E	N	M	P	.	.	.	.	.	.	.	.	.	.	Y	A	R	D	L	F	S	R	L	G	E	V	T	A	V	P	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	R	S	V	T	K	V	N
Query Conservation								.					.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.					.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																																																																							.
Template Sequence		M	R	V	G	I	P	T	E	T	K	N	N	E	F	R	V	A	I	T	P	A	G	V	A	E	L	T	R	R	G	H	E	V	L	I	Q	A	G	A	G	E	G	S	A	I	T	D	A	D	F	K	A	A	G	A	Q	L	V	G	T	A	D	Q	V	W	A	D	A	D	.	L	L	L	K	V	K	E	P	I	A
Template Known Secondary structure											S	T	T					S											T	T	T						B	T	T	T	T	G	G	G	T			S					T	T					B	S	S						S	S		S	.					S	S				G
Template Predicted Secondary structure																																																																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.
		51	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure							.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	L	L	A	.	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K	Q	A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	Y	G	R	L	R	H	G	Q	I	L	F	T	F	L	H	L	A	A	S	R	A	C	T	D	A	L	L	D	S	G	T	T	S	I	A	Y	E	T	V	Q	T	A	D	G	A	L	P	L	L	A	P	M	S	E	V	A	G	R	L	A	A	Q	V	G	A	Y	H	L	M	R	T	Q	G	G	R	G	V	L
Template Known Secondary structure		G	G	G	G	G			S	S	S								G	G	G										T	T	T						G	G	G				T	T	S			T	T	T																		T	T	S	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
					111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.													.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	K	T	L	L	C	D	P	P	R	A	D	R	G	.	.	.	.	.	.	.	.	.	.	.	.	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T
Query Conservation		.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	G	V	P	G	V	E	P	A	D	V	V	V	I	G	A	G	T	A	G	Y	N	A	A	R	I	A	N	G	M	G	A	T	V	T	V	L	D	I	N	I	D	K	L	R	Q	L	D	A	E	F	C	G	R	I	H	T	R	Y	S	S	A	Y	E	L	E	G	A	V	K	R	A	D	L	V	I	G	A	V
Template Known Secondary structure		T	T		B	T	T	B											S													T	T								S												T	T	T		S																		S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.										.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.
Query Sequence		P	L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A	V	V	D	N	T	A	L	L	T	C	L	N	E	.	.	.	.	.	.	.	.	.	G	Q	K	L	S	V	V	L	D	V	W	E	G	E	P	E	L	N	V	E	L	L	K
Query Conservation																																																		.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	H	M	K	P	G	A	V	L	V	D	I	T	L	F	Y	C	M	P	A	S	V	P	K	T	S	T	Y	A	L	T	N	A	T	M	P	Y	V	L	E	L	A	D	H	G	W	R	A	A	C	R	S	N	P	A	L	A	K	G	L	S
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T													G	G	G	S																														S						T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.																	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
				247	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	K	V	D	I	G	T	S	H	I	A	G	Y	T
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		T	H	E	G	A	L	L	S	E	R	V	A	T	D	L
Template Known Secondary structure				T	T											T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions