Job Description P05459 Confidence 95.05% Date Thu Jan 5 10:58:44 GMT 2012 Rank 419 Aligned Residues 201 % Identity 13% Template c2qz9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 ii from vibrio cholerae Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		115	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.								.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure												.																	.	.	.						.	.	.	.	.	.	.																																				.	.	.
Query SS confidence												.																	.	.	.						.	.	.	.	.	.	.																																				.	.	.
Query Sequence		Y	D	R	T	V	G	I	V	G	V	.	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	.	.	.	K	T	L	L	C	.	.	.	.	.	.	.	D	P	P	R	A	D	R	G	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P	L	F	K	D	.	.	.
Query Conservation												.																	.	.	.						.	.	.	.	.	.	.																																				.	.	.
Alig confidence												.																	.	.	.						.	.	.	.	.	.	.																																				.	.	.
Template Conservation
Template Sequence		Q	Q	F	N	V	A	I	F	G	A	T	G	A	V	G	E	T	M	L	E	V	L	Q	E	R	E	F	P	V	D	E	L	F	L	L	A	S	E	R	S	E	G	K	T	Y	R	F	N	G	K	T	V	R	V	Q	N	V	E	E	F	D	W	S	Q	V	H	I	A	L	F	S	A	G	G	E	L	S	A	K	W
Template Known Secondary structure										T	T	T	S													T	T												S	S	S	T	T						T	T								G	G	G			G	G	G		S						S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																	181	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																																																.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																																																.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	Y	K	T	L	H	.	.	.	.	.	.	.	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A	V	V	D	N	T	A	L	L	T	C	L	N	E	G	Q	K	L	S	V	V	L	D	V	W	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																																																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																																																.	.	.	.
Template Conservation
Template Sequence		A	P	I	A	A	E	A	G	V	V	V	I	D	N	T	S	H	F	R	Y	D	Y	D	I	P	L	V	V	P	E	V	N	P	E	A	I	A	E	F	R	N	R	N	I	I	A	N	P	N	C	S	T	I	Q	M	L	V	A	L	K	P	I	Y	D	A	V	G	I	E	R	I	N	V	T	T	Y	Q	S	V	S
Template Known Secondary structure								T	T							S	S	T	T	T	T		T	T	S		B			T	T	T		G	G	G	G	G	G	G	G	T	T	S																																				G	G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
																							235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	E	P	E	L	N	V	E	L	L	K	K	V	D	I	G	T	S	H	I	A	G	Y	T	L	E	G	K	A	R	G	T	T	Q	V	F	E	A	Y	S	K	F	I	G	H	E	Q	H	V	A	L	D	T	L	L	P	A	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																							.	.
Template Sequence		G	A	G	K	A	G	I	D	E	L	A	G	Q	T	A	K	L	L	N	G	Y	P	A	E	T	N	T	F	S	Q	Q	I	A	F	N	C	I	.	.	P	Q	I	D	Q	F	M	D	N	G	Y	T	K	E	E	M	K	M	V	W	E	T	Q	K	I	F	N	D	P	S	I	M	V	N	P	T	C	V	R	V	P
Template Known Secondary structure		G	G																T	T	T						S	S	S	S	S			T	T			B	.	.	S			S		B		T	T	S	S	B														T	T		T	T									B		S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
								294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	F	G	R	I	T	L	H	G	P	L	D	Q	P	T	L	K	R	L	V	H	L	V	Y
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	Y	G	H	A	E	A	V	H	V	E	T	R	A	P	I	D	A	E	Q	V	M	D	M	L	E	Q	T	D
Template Known Secondary structure			S	S											S	S													T	S	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions