Return to main results Retrieve Phyre Job Id

Job DescriptionP05459
Confidence94.25%DateThu Jan 5 10:58:44 GMT 2012
Rank457Aligned Residues91
% Identity20%Templatec2pwzG_
PDB info PDB header:oxidoreductaseChain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   117..120... ......130...... ...140.........150........ .160.........170........
Predicted Secondary structure 

.

...













..............






Query SS confidence 






.












. . .





















. . . . . . . . . . . . . .



















Query Sequence  RTVGIVG. VGNVGRRLQARLE. . . ALGIKTLLCDPPRADRGDEGDF. . . . . . . . . . . . . . RSLDELVQRADILTFHTPLF
Query Conservation 






. 
 

  

  
 ...


  
   

           ..............  
 


  






 


Alig confidence 






.












...





















..............



















Template Conservation 


 


  
 

   
  
        

 
 
          

                    
  








  
Template Sequence  MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA
Template Known Secondary structure 
TTTSS
TT
SSTTTS
SS
SS

TT
S




Template Predicted Secondary structure 





























Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   179180.........190.. .......200.......
Predicted Secondary structure 











.........





Query SS confidence 













. . . . . . . . .














Query Sequence  KDGPYKTLHLADEK. . . . . . . . . LIRSLKPGAILINAC
Query Conservation    
   
  


  ......... 
  

 





 
Alig confidence 













.........














Template Conservation        
   
  
  
   
   
    
  
 



Template Sequence  RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT
Template Known Secondary structure 

SS


TTS
S
Template Predicted Secondary structure 









Template SS confidence 





































   81........90.........100.........110........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions