Job Description P05459 Confidence 100.00% Date Thu Jan 5 10:58:44 GMT 2012 Rank 17 Aligned Residues 285 % Identity 31% Template c2pi1C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase from aquifex2 aeolicus complexed with nad and lactic acid Resolution 2.12 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																	.																																				.
Query SS confidence																	.																																				.
Query Sequence		D	E	N	M	P	Y	A	R	D	L	F	S	R	L	G	.	E	V	T	A	V	P	G	R	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	R	S	V	T	K	V	N	E	S	L	L	A	.	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K	Q	A	G	I	G
Query Conservation																	.																																				.
Alig confidence																	.																																				.
Template Conservation
Template Sequence		Q	E	D	V	P	F	Y	Q	E	A	L	K	D	L	S	L	K	I	Y	T	T	D	V	S	K	V	P	E	N	E	L	K	K	A	E	L	I	S	V	F	V	Y	D	K	L	T	E	E	L	L	S	K	X	P	R	L	K	L	I	H	T	R	S	V	G	F	D	H	I	D	L	D	Y	C	K	K	K	G	I	L
Template Known Secondary structure		G	G	G								T	T	T	S						S	S		G	G	G	S									S						T	T	S		B						T	T		T	T							S	S	S			T	T	B									T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	K	T	L	L
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	H	I	P	A	Y	S	P	E	S	V	A	E	H	T	F	A	X	I	L	T	L	V	K	R	L	K	R	I	E	D	R	V	K	K	L	N	F	S	Q	D	S	E	I	L	A	R	E	L	N	R	L	T	L	G	V	I	G	T	G	R	I	G	S	R	V	A	X	Y	G	L	A	F	G	X	K	V	L	C
Template Known Secondary structure						T	T	S																		T	T										T	T						G	G	G					G	G	G	S								S													T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		C	D	P	P	R	A	D	R	G	.	.	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P	L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A	V	V	D	N	T	A	L	L	T	C	L	N
Query Conservation											.	.
Alig confidence											.	.																												.	.	.	.
Template Conservation																																								.	.	.	.
Template Sequence		Y	D	V	V	K	R	E	D	L	K	E	K	G	C	V	Y	T	S	L	D	E	L	L	K	E	S	D	V	I	S	L	H	V	P	Y	T	K	E	.	.	.	.	T	H	H	X	I	N	E	E	R	I	S	L	X	K	D	G	V	Y	L	I	N	T	A	R	G	K	V	V	D	T	D	A	L	Y	R	A	Y	Q
Template Known Secondary structure				S	S									T														S										T	T	.	.	.	.	T	T	T		B								S		T	T							S		G	G	G	B
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.																.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query SS confidence																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Query Sequence		E	G	Q	K	L	S	V	V	L	D	V	W	E	G	E	P	E	L	.	N	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	K	K	V	D	.	I	G	T	S	H	I	A	G	Y	T	L	E	G	K	A	R	G	T	T	Q	V	F	E	A	Y	S	K	F	I	G	H	E	Q	H	V	A
Query Conservation																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Alig confidence																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation
Template Sequence		R	G	K	F	S	G	L	G	L	D	V	F	E	D	E	E	I	L	I	L	K	K	Y	T	E	G	K	A	T	D	K	N	L	K	I	L	E	L	A	C	K	D	N	V	I	I	T	P	H	I	A	Y	Y	T	D	K	S	L	E	R	I	R	E	E	T	V	K	V	V	K	A	F	V	K	G	D	L	E	Q	I
Template Known Secondary structure		T	T								S			T	T						T	T	G	G	G	G	T														T	S	T	T						S		T	T		S																				S	S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		286	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	L	L	P	A	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	N	F	V	V	G	P	S
Template Known Secondary structure		G	G	G	B	S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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