Return to main results Retrieve Phyre Job Id

Job DescriptionP05459
Confidence100.00%DateThu Jan 5 10:58:44 GMT 2012
Rank21Aligned Residues295
% Identity25%Templatec2d0iC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:dehydrogenase; PDBTitle: crystal structure ph0520 protein from pyrococcus horikoshii ot3
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10 .........20.........30.. .......40.........50..... ....60.........70.......
Predicted Secondary structure 


.









..











.












Query SS confidence 








.





















. .






















.





















Query Sequence  KILVDENMP. YARDLFSRLGEVTAVPGRPIPV. . AQLADADALMVRSVTKVNESLLA. GKPIKFVGTATAGTDHVDEAWL
Query Conservation 


 

 

.   
      

          ..
 
 








 
 
   

 .   

 
     
 
 

    
Alig confidence 








.





















..






















.





















Template Conservation 


            
     
         
    
   
 

      
    
   
 

 
    

 
 

    
Template Sequence  KVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEA
Template Known Secondary structure 
S


S

S

TTGGG
S
TTS
B
TT
TT

SSS

TTB
Template Predicted Secondary structure 


































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   78.80.........90.........100......... 110.........120.........130...
Predicted Secondary structure 







........................










Query SS confidence 































. . . . . . . . . . . . . . . . . . . . . . . .























Query Sequence  KQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER. . . . . . . . . . . . . . . . . . . . . . . . DGFSLYDRTVGIVGVGNVGRRLQA
Query Conservation     

 
 



 

 



 

  

 
 
 ........................    
 







 
 

  

 
Alig confidence 































........................























Template Conservation     

 
 
  
     


 

   
   
             
               
 
 





 
 

  

 
Template Sequence  TKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIAR
Template Known Secondary structure  TT




TT



TTS




STT


S
Template Predicted Secondary structure 


































Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   134.....140.........150... ......160.........170.........180.........190.........200.........210
Predicted Secondary structure 










...






























Query SS confidence 



















. . .
























































Query Sequence  RLEALGIKTLLCDPPRADRG. . . DEGDFRSLDELVQRADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA
Query Conservation   
 


  
   

      ...       
 


  






 


  
   
  


   
  

 





 


 
Alig confidence 



















...


























....













.










Template Conservation     



 
                     
 


  



   



  ....
  

    
  

.

 


 


 
Template Sequence  RLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRD. . . . TYHIINEERVKKLE. GKYLVNIGRGA
Template Known Secondary structure  GGGT

TT






S




TT....TTTTB
TT.T

S
GG
Template Predicted Secondary structure 






















....







.






Template SS confidence 















































































   164.....170.........180.........190.........200.........210... ......220....... ..230........
 
   211........220.........230.........240 ......... 250.........260.........270.........280........
Predicted Secondary structure 













.





.














Query SS confidence 





























.








.






































Query Sequence  VVDNTALLTCLNEGQKLSVVLDVWEGEPEL. NVELLKKVD. IGTSHIAGYTLEGKARGTTQVFEAYSKFIGHEQHVALDT
Query Conservation 



 

  

  
 
  
 


 
 

  .   

    .
 





 
 
 
 
 
 
    
              
Alig confidence 





























.








.






































Template Conservation   


 

  

  
 
 





   

     

   







 
  
             

   
 
    
 

Template Sequence  LVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVN
Template Known Secondary structure  GB
TT
SSS

SSSS
S

GGGG
TTT

S
TT

TT


TTBS
Template Predicted Secondary structure 



































Template SS confidence 















































































   239240.........250.........260.........270.........280.........290.........300.........310........
 
   289290.........300.
Predicted Secondary structure 












Query SS confidence 












Query Sequence  LLPAPEFGRITLH
Query Conservation               
Alig confidence 












Template Conservation               
Template Sequence  KEVLEVRPIENVK
Template Known Secondary structure  TTS
GGGG
Template Predicted Secondary structure 









Template SS confidence 












   319320.........330.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions