Job Description P05459 Confidence 100.00% Date Thu Jan 5 10:58:44 GMT 2012 Rank 28 Aligned Residues 269 % Identity 24% Template c1qp8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase; PDBTitle: crystal structure of a putative formate dehydrogenase from2 pyrobaculum aerophilum Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																																														.
Query SS confidence												.																																														.
Query Sequence		M	K	I	L	V	D	E	N	M	P	.	Y	A	R	D	L	F	S	R	L	G	E	V	T	A	V	P	G	R	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	R	S	V	T	K	V	N	E	S	L	L	A	.	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K
Query Conservation												.																																														.
Alig confidence												.																		.	.	.	.	.	.	.										.	.	.										.
Template Conservation																														.	.	.	.	.	.	.										.	.	.
Template Sequence		X	E	L	Y	V	N	F	E	L	P	P	E	A	E	E	E	L	R	K	Y	F	K	I	V	R	G	G	D	.	.	.	.	.	.	.	L	G	N	V	E	A	A	L	V	.	.	.	S	R	I	T	A	E	E	L	A	K	X	P	R	L	K	F	I	Q	V	V	T	A	G	L	D	H	L	P	W	E	S	I	P
Template Known Secondary structure								S												T	T						S	S		.	.	.	.	.	.	.		T	T	B					B	.	.	.	S											T	T						B	S	S	S			T	T	S			T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.										.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.								.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	K
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		P	.	H	V	T	V	A	G	N	A	G	S	N	A	D	A	V	A	E	F	A	L	A	L	L	L	A	P	Y	K	R	I	I	Q	Y	G	E	K	X	K	R	G	D	Y	G	R	D	V	E	I	P	L	I	Q	G	E	K	V	A	V	L	G	L	G	E	I	G	T	R	V	G	K	I	L	A	A	L	G	A	Q
Template Known Secondary structure		T	.	T	S							S	S	S																	T	T										T	T						S						T	T							S		S	T												T	T
Template Predicted Secondary structure			.
Template SS confidence
		71		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	C	D	P	P	R	A	D	R	G	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P	L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A	V	V	D	N	T	A	L	L	T	C	L
Query Conservation
Alig confidence													.																												.	.	.	.
Template Conservation													.																												.	.	.	.
Template Sequence		V	R	G	F	S	R	T	P	K	E	G	.	P	W	R	F	T	N	S	L	E	E	A	L	R	E	A	R	A	A	V	C	A	L	P	L	N	K	H	.	.	.	.	T	R	G	L	V	K	Y	Q	H	L	A	L	X	A	E	D	A	V	F	V	N	V	G	R	A	E	V	L	D	R	D	G	V	L	R	I	L
Template Known Secondary structure							S	S				S	.	S	S			B	S		S					T	T		S									S	T	T	.	.	.	.	T	T	T		B						T	T	S		T	T							S		G	G	G	B
Template Predicted Secondary structure													.																												.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240		.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																		.				.										.									.	.
Query SS confidence																		.				.										.									.	.
Query Sequence		N	E	G	Q	K	L	S	V	V	L	D	V	W	E	G	E	.	P	E	L	.	N	V	E	L	L	K	K	V	D	.	I	G	T	S	H	I	A	G	.	.	Y	T	L	E	G	K	A	R	G	T	T	Q	V	F	E	A	Y	S	K	F	I	G	H	E	Q	H	V	A
Query Conservation																		.				.										.									.	.
Alig confidence																		.				.										.									.	.
Template Conservation
Template Sequence		K	E	R	P	Q	F	I	F	A	S	D	V	W	W	G	R	N	D	F	A	K	D	A	E	F	F	S	L	P	N	V	V	A	T	P	W	V	A	G	G	Y	G	N	E	R	V	W	R	Q	X	V	X	E	A	V	R	N	L	I	T	Y	A	T	G	G	R	P	R	N
Template Known Secondary structure					T	T						S			T	T	T	T			G	G	G					T	S	T	T						S		S	S	S	S	S																					T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions