Job Description P05459 Confidence 99.94% Date Thu Jan 5 10:58:44 GMT 2012 Rank 42 Aligned Residues 209 % Identity 16% Template c1pjcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); PDBTitle: l-alanine dehydrogenase complexed with nad Resolution 2.00 Å

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		1	.	.		.	.	.	.	.	.	10											.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure					.								.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.								.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	I	.	L	V	D	E	N	M	P	.	.	.	.	.	.	.	.	.	.	Y	A	R	D	L	F	S	R	L	G	E	V	T	A	V	P	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	R	S	V	T	K	V	N	E
Query Conservation					.								.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.								.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	E	I	G	V	P	K	E	I	K	N	Q	E	F	R	V	G	L	S	P	S	S	V	R	T	L	V	E	A	G	H	T	V	F	I	E	T	Q	A	G	I	G	A	G	F	A	D	Q	D	Y	V	Q	A	G	A	Q	V	V	P	S	A	K	D	A	W	S	R	E	M	V	V	K	V	K	E	P	L	P	A	E
Template Known Secondary structure											S	T	T					S											T	T	T							T	T	T	T	G	G	G	T										T					S	S						T	S	S					S	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	L	A	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K	Q	A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	D	L	M	Q	K	D	Q	L	L	F	T	Y	L	H	L	A	A	A	R	E	L	T	E	Q	L	M	R	V	G	L	T	A	I	A	Y	E	T	V	E	L	P	N	R	S	L	P	L	L	T	P	M	S	I	I	A	G	R	L	S	V	Q	F	G	A	R	F	L	E	R	Q	Q	G	G	R	G	V	L	L	G
Template Known Secondary structure		G	G	G			T	T									G	G	G												T						G	G	G				T	T	S			T	T	T																			T	S	G	G	G	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
			111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.													.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.
Predicted Secondary structure		.																																										.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence		.																																										.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	K	T	L	L	C	D	P	P	R	A	D	.	.	.	.	.	.	.	.	.	.	.	.	R	G	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	.	P
Query Conservation		.																																										.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence		.																																										.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		G	V	P	G	V	K	P	G	K	V	V	I	L	G	G	G	V	V	G	T	E	A	A	K	M	A	V	G	L	G	A	Q	V	Q	I	F	D	I	N	V	E	R	L	S	Y	L	E	T	L	F	G	S	R	V	E	L	L	Y	S	N	S	A	E	I	E	T	A	V	A	E	A	D	L	L	I	G	A	V	L	V
Template Known Secondary structure			B	T	T	B											S													T	T								S													G	G	G	S																T		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	.	.	R	G	A	V	V	D
Query Conservation																																	.	.
Alig confidence						.	.	.	.																								.	.
Template Conservation						.	.	.	.
Template Sequence		P	G	R	R	.	.	.	.	A	P	I	L	V	P	A	S	L	V	E	Q	M	R	T	G	S	V	I	V	D	V	A	V	D	Q	G	G	C	V	E
Template Known Secondary structure		T	T	S	S	.	.	.	.					B						T	T	S		T	T						T	T		T	T			S	B	T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		241	.	.	.					.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions