Job Description P05459 Confidence 100.00% Date Thu Jan 5 10:58:44 GMT 2012 Rank 39 Aligned Residues 281 % Identity 20% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.		.	.	.	.	.	.	10											.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.
Predicted Secondary structure					.								.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence					.								.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		M	K	I	.	L	V	D	E	N	M	P	.	.	.	.	.	.	.	.	.	.	Y	A	R	D	L	F	S	R	L	G	E	V	T	A	V	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	.	.	.	.	R	S	V
Query Conservation					.								.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence					.								.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		M	K	I	A	I	P	K	E	R	R	P	G	E	D	R	V	A	I	S	P	E	V	V	K	K	L	V	G	L	G	F	E	V	I	V	E	Q	G	A	G	V	G	A	S	I	T	D	D	A	L	T	A	A	G	A	T	I	A	S	T	A	A	Q	A	L	S	Q	A	D	V	V	W	K	V	Q	R	P	M	T	A
Template Known Secondary structure											S	T	T					S												T	T							T	T	T	T	G	G	G	T									T	T					S	S						T	T		S											G
Template Predicted Secondary structure
Template SS confidence
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
		47	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure											.																																												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	V	N	E	S	L	L	A	.	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D	H	V	D	E	A	W	L	K	Q	A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	.	.	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																																												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																																												.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	G	T	D	E	V	A	L	I	K	E	G	A	V	L	M	C	H	L	G	A	L	T	N	R	P	V	V	E	A	L	T	K	R	K	I	T	A	Y	A	M	E	L	M	P	R	I	S	R	A	Q	S	M	D	I	L	S	S	Q	S	N	L	A	G	Y	R	A	V	I	D	G	A	Y	E	F	A	R	A	F
Template Known Secondary structure		G	G	S	S		S	G	G	G	S		T	T									G	G	G		S									T	T						G	G	G					G	G	G	T	T	T																							S	S		S
Template Predicted Secondary structure
Template SS confidence
		881	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
								111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																									.	.	.	.											.	.	.	.
Query SS confidence		.	.	.	.	.	.																																									.	.	.	.											.	.	.	.
Query Sequence		.	.	.	.	.	.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L	Q	A	R	L	E	A	L	G	I	K	T	L	L	C	D	P	P	R	A	.	.	.	.	D	R	G	D	E	G	D	F	R	S	.	.	.	.	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P
Query Conservation		.	.	.	.	.	.																																									.	.	.	.											.	.	.	.
Alig confidence		.	.	.	.	.	.																																									.	.	.	.											.	.	.	.
Template Conservation
Template Sequence		P	M	M	M	T	A	A	G	T	V	P	P	A	R	V	L	V	F	G	V	G	V	A	G	L	Q	A	I	A	T	A	K	R	L	G	A	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	A	E	A	V	L	K	E	L	V	K	T	D	I	A	I	T	T	A	L
Template Known Secondary structure		S					S	S														S													T	T								S	S	T	T	S					T	T	T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		961	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040
		177		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure			.																															.	.																															.														.	.
Query SS confidence			.																															.	.																															.														.	.
Query Sequence		L	.	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	.	.	R	G	A	V	V	D	N	T	A	L	L	T	C	L	N	E	G	Q	K	L	S	V	V	L	D	V	W	E	G	E	.	P	E	L	N	V	E	L	L	K	K	V	D	I	.	.
Query Conservation			.																															.	.																															.														.	.
Alig confidence			.				.	.	.	.																								.	.																															.														.	.
Template Conservation							.	.	.	.
Template Sequence		I	P	G	K	P	.	.	.	.	A	P	V	L	I	T	E	E	M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	I	V	V	K	H	G	V	K	I	V	G	H	T	N	V	P	S	R	V	A	A	D	A	S	P	L	F	A	K	N	L	L	N	F
Template Known Secondary structure			T	T	S		.	.	.	.					S							T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T						T	T							S		G	G	G	G	G
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		1067	.	.	1070	.					.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	S	H	I	A	G	Y	T	L	E	G	K	A	R	G	T	T	Q	V	F	E	A	Y	S	K	F	I	G	H	E	Q	H	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	P	H	V	D	K	D	T	K	T	L	V	M	K	L	E	D	E	T	V	S	G	T	C	V	T	R	D	G	A	I	V	H	P
Template Known Secondary structure			G	G	G			T	T	T	T						T	T	S											T	T				S
Template Predicted Secondary structure
Template SS confidence
		1143	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions