Job Description P05459 Confidence 100.00% Date Thu Jan 5 10:58:44 GMT 2012 Rank 9 Aligned Residues 281 % Identity 27% Template c1dxyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-2-hydroxyisocaproate dehydrogenase; PDBTitle: structure of d-2-hydroxyisocaproate dehydrogenase Resolution 1.86 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																						.	.	.	.	.							.	.																														.	.	.
Query SS confidence																						.	.	.	.	.							.	.																														.	.	.
Query Sequence		M	K	I	L	V	D	E	N	M	P	Y	A	R	D	L	F	S	R	L	G	.	.	.	.	.	E	V	T	A	V	P	.	.	G	R	P	I	P	V	A	Q	L	A	D	A	D	A	L	M	V	R	S	V	T	K	V	N	E	S	L	L	A	.	.	.	G	K	P	I	K	F	V	G	T	A	T	A	G	T	D
Query Conservation																						.	.	.	.	.							.	.																														.	.	.
Alig confidence																						.	.	.	.	.							.	.																														.	.	.
Template Conservation
Template Sequence		M	K	I	I	A	Y	G	A	R	V	D	E	I	Q	Y	F	K	Q	W	A	K	D	T	G	N	T	L	E	Y	H	T	E	F	L	D	E	N	T	V	E	W	A	K	G	F	D	G	I	N	S	L	Q	T	T	P	Y	A	A	G	V	F	E	K	M	H	A	Y	G	I	K	F	L	T	I	R	N	V	G	T	D
Template Known Secondary structure								S			T	T	T																			S	S				T	T	G	G	G	G	G	T	T		S							S	S		B											T	T							S	S	S			T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	V	D	E	A	W	L	K	Q	A	G	I	G	F	S	A	A	P	G	C	N	A	I	A	V	V	E	Y	V	F	S	S	L	L	M	L	A	E	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	S	L	Y	D	R	T	V	G	I	V	G	V	G	N	V	G	R	R	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	D	M	T	A	M	K	Q	Y	G	I	R	L	S	N	V	P	A	Y	S	P	A	A	I	A	E	F	A	L	T	D	T	L	Y	L	L	R	N	M	G	K	V	Q	A	Q	L	Q	A	G	D	Y	E	K	A	G	T	F	I	G	K	E	L	G	Q	Q	T	V	G	V	M	G	T	G	H	I	G	Q	V	A
Template Known Secondary structure		T	B								T	T							T	T	S																		T	T										T	T						T							G	G	G	S								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		Q	A	R	L	E	A	L	G	I	K	T	L	L	C	D	P	.	P	R	A	D	R	G	D	E	G	D	F	R	S	L	D	E	L	V	Q	R	A	D	I	L	T	F	H	T	P	L	F	K	D	G	P	Y	K	T	L	H	L	A	D	E	K	L	I	R	S	L	K	P	G	A	I	L	I	N	A	C	R	G	A
Query Conservation																		.
Alig confidence																		.																																		.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		I	K	L	F	K	G	F	G	A	K	V	I	A	Y	D	P	Y	P	M	K	G	D	H	P	D	F	D	Y	V	S	L	E	D	L	F	K	Q	S	D	V	I	D	L	H	V	P	G	I	E	Q	.	.	.	.	N	T	H	I	I	N	E	A	A	F	N	L	M	K	P	G	A	I	V	I	N	T	A	R	P	N
Template Known Secondary structure								T	T								S	S			S	S			T	T														S										G	G	.	.	.	.	G	T	T	S	B								S		T	T							S		T	T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.															240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		V	V	D	N	T	A	L	L	T	C	L	N	E	G	Q	K	L	S	V	V	L	D	V	W	E	G	E	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	V	E	L	L	K	K	V	D	.	I	G	T	S	H	I	A	G	Y	T	L	E	G	K	A	R	G	T	T	Q	V	F	E	A	Y	S
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		L	I	D	T	Q	A	M	L	S	N	L	K	S	G	K	L	A	G	V	G	I	D	T	Y	E	Y	E	T	E	D	L	L	N	L	A	K	H	G	S	F	K	D	P	L	W	D	E	L	L	G	M	P	N	V	V	L	S	P	H	I	A	Y	Y	T	E	T	A	V	H	N	M	V	Y	F	S	L	Q	H	L	V
Template Known Secondary structure		S	B											T	T	S							S	S		T	T												S	S											T		T	T					S	S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	I	G	H	E	Q	H	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	L	T	K	G	E	T	S	T
Template Known Secondary structure							S			T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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