Job Description P76242 Confidence 99.97% Date Thu Jan 5 12:21:06 GMT 2012 Rank 2 Aligned Residues 380 % Identity 10% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		L	S	G	K	N	R	I	V	L	I	A	G	I	L	M	I	A	T	T	L	R	V	T	F	T	G	A	A	P	L	L	D	T	.	I	R	S	A	Y	S	L	T	T	A	Q	T	G	L	L	T	T	L	P	L	L	A	F	A	L	I	S	P	L	A	A	P	V	A	R	R	F	G	M	E	R	S	L	F	A	A
Query Conservation																																			.
Alig confidence																				.	.	.	.												.
Template Conservation																				.	.	.	.
Template Sequence		L	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	.	.	.	.	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I
Template Known Secondary structure				S																.	.	.	.																																						T												T	T		T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		L	L	L	I	C	A	G	I	A	I	R	S	L	P	S	P	Y	L	L	F	G	G	T	A	V	I	G	G	G	I	A	L	G	N	V	L	L	P	G	L	I	K	R	D	F	P	H	S	.	.	.	.	.	.	V	A	R	L	T	G	A	Y	S	L	T	M	G	A	A	A	A	L	G	S	A	M	V	V	P	L
Query Conservation																																																		.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G
Template Known Secondary structure								T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.														.	220	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	N	G	F	G	W	Q	G	A	L	L	M	L	M	C	F	P	L	L	A	L	F	L	W	L	P	Q	W	R	S	Q	Q	H	A	N	L	S	T	S	R	A	L	H	T	R	G	I	W	R	S	P	L	A	W	Q	V	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	G	I	N	S	L	V
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F
Template Known Secondary structure																												S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	V	I	I	G	W	L	P	A	I	L	I	S	H	G	Y	S	E	A	Q	A	G	S	L	H	G	L	L	Q	L	A	T	A	A	P	G	L	L	I	P	L	F	L	H	H	V	K	D	Q	R	G	I	A	A	F	V	A	L	M	C	A	V	G	A	V	G	L	C	F	M	P	A	H	A	I	T	W	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	A	T	S	A	L	E	V	V	I	L	K
Template Known Secondary structure										T	T	S	S	S																									T	T																														T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		L	F	G	F	G	S	G	A	T	M	I	L	G	L	T	F	I	G	L	R	A	S	S	A	H	Q	A	A	A	L	S	G	M	A	Q	S	V	G	Y	.	L	L	A	A	C	G	P	P	L	M	G	K	I	H	D	A	N	G	N	W	S	V	P	L	M	G	V	A	I	L	S	L	L	M	A	I	F	G	L	C
Query Conservation																																									.
Alig confidence																																									.																			.
Template Conservation																																																												.
Template Sequence		T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	.	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F
Template Known Secondary structure																							S		G	G	G										T	T	T																					.
Template Predicted Secondary structure																																																												.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		386	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	D	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	S	G	P	G
Template Known Secondary structure			S			S	S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions