Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 22 Aligned Residues 301 % Identity 18% Template c3sthA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	E	G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.									.															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.									.															.	.
Template Sequence		M	V	.	.	C	K	L	G	I	N	G	F	.	G	R	I	G	R	L	V	F	R	A	A	M	E	R	.	.	G	D	V	E	V	L	A	I	N	D	P	F	M	S	L	D	Y	M	V	Y	L	L	R	Y	D	S	V	H	G	H	Y	P	G	E	V	S	H	K	D	G	K	L	I	V	G	G	K	A	V	T	V
Template Known Secondary structure				.	.							S		.	S												T		.	.	T	T									T	T	S													T	T	T		S		S	S						T	T					T	T
Template Predicted Secondary structure				.	.									.															.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		57	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		Q	D	A	A	.	.	.	.	.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.																																									.	.																			.	.
Template Conservation																																																			.	.																			.	.
Template Sequence		F	N	E	K	E	P	T	A	I	P	W	G	Q	A	G	V	H	Y	I	C	E	S	T	G	I	F	L	T	K	E	K	A	Q	A	H	L	T	N	G	A	K	K	V	I	M	S	A	P	P	.	.	K	D	D	T	P	M	F	V	M	G	V	N	N	D	Q	Y	K	S	.	.	S	D	V	I	V	S	N	A	S
Template Known Secondary structure					S	S	G	G	G							T								S	S	S			S					G	G	G	G	S	S	S							S	S			.	.	S	S	S			B			T	T	T	T	G	G	G			T	.	.	T
Template Predicted Secondary structure																																																			.	.																			.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	S	Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	T	N	C	L	A	P	L	A	K	I	V	H	D	K	F	G	I	V	E	G	L	M	T	T	V	H	A	M	T	A	N	Q	L	T	.	.	.	.	.	.	.	.	.	.	.	V	D	G	P	S	K	G	G	K	D	W	R	A	G	R	S	A	G	V	N	I	I	P	A	S	T	G	A	A	K	A	V	G
Template Known Secondary structure																		T															T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	S	S				G	G	G			G	G	G	G	S		G	G	G
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.												.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		E	E	R	R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S
Query Conservation																																																											.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	.	.	.	.	I	I	P	S	L	N	G	K	L	T	G	M	A	F	R	V	P	V	P	D	V	S	V	V	D	L	T	C	K	L	A	K	P	A	K	Y	E	D	I	V	A	A	V	K	E	A	A	T	S	G	P	M	K	G	I	I	S	Y	T	D	E	E	V	V	S	S	D	F	V
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.		S	G	G	G	T	T	T									S		S	S											S	S																	S	S	T	T	T	T	T						S				G	G	G	G	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221											.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		288	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		G	T	P	H	L	S	V	G	C	V	.	.	.	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E
Query Conservation												.	.	.
Alig confidence									.	.		.	.	.																					.
Template Conservation									.	.																									.
Template Sequence		H	C	K	F	S	S	V	.	.	F	D	I	N	A	G	I	M	L	N	D	T	F	V	K	L	V	S	W	Y	D	N	E	W	.	G	Y	S	N	R	L	V	E	L	A	H	Y	M	S	V	Q
Template Known Secondary structure		T				S			.	.			T	T	T						T	T										T	T		.
Template Predicted Secondary structure									.	.																									.
Template SS confidence
		291	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions