Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 44 Aligned Residues 296 % Identity 19% Template c3hq4R_ PDB info PDB header:oxidoreductase Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1; PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																								.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	E	G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	N	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.									.															.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.									.															.	.
Template Sequence		M	A	.	.	V	K	V	A	I	N	G	F	.	G	R	I	G	R	L	A	F	R	R	I	Q	E	V	.	.	E	G	L	E	V	V	A	V	N	D	L	T	D	D	D	M	L	A	H	L	L	K	Y	D	T	M	Q	G	R	F	T	G	E	V	E	V	V	D	G	G	F	R	V	N	G	K	E	V	K	S	F
Template Known Secondary structure				.	.									.	S											T	T	S	.	.	T	T									S	S													T	T	T					S						T	T					T	T
Template Predicted Secondary structure				.	.									.															.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		58	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		D	A	A	.	.	.	.	.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.																																							.	.																					.	.
Template Conservation																																																.	.																					.	.
Template Sequence		S	E	P	D	A	S	K	L	P	W	K	D	L	N	I	D	V	V	L	E	C	T	G	F	Y	T	D	K	D	K	A	Q	A	H	I	E	A	G	A	K	K	V	L	I	S	A	.	.	P	A	T	G	D	L	K	T	I	V	F	N	T	N	H	Q	E	L	D	G	.	.	S	E	T	V	V	S	G	A	S	S
Template Known Secondary structure				S		G	G	G	S		T	T	T	T	T		S						S	S	S			B											T		S					S	S	.	.			B	S	S						T	T	T	T	G	G	G			S	.	.			S
Template Predicted Secondary structure																																																.	.																					.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		T	T	N	S	L	A	P	V	A	K	V	L	N	D	D	F	G	L	V	E	G	L	M	T	T	I	H	A	Y	T	G	D	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	D	A	P	H	R	K	G	D	K	R	R	A	R	A	A	A	E	N	I	I	P	N	S	T	G	A	A	K	.	.	.	.
Template Known Secondary structure																																T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				T	T			T	T	T	T	S		G	G	G									T	T	T	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.													.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.														.	.
Query SS confidence																																													.														.	.
Query Sequence		E	R	R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	.	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G	T
Query Conservation																																													.														.	.
Alig confidence		.	.	.	.	.	.																																						.														.	.									.	.	.
Template Conservation		.	.	.	.	.	.																																																														.	.	.
Template Sequence		.	.	.	.	.	.	A	I	G	K	V	I	P	E	I	D	G	K	L	D	G	G	A	Q	R	V	P	V	A	T	G	S	L	T	E	L	T	V	V	L	E	K	Q	D	V	T	V	E	Q	V	N	E	A	M	K	N	A	S	N	E	S	F	G	Y	T	E	D	.	.	.	E	I	V	S	S	D	V	V	G	M
Template Known Secondary structure		.	.	.	.	.	.	T	G	G	G	T		G	G	G	T	T	S									S		S	S											S	S	S	S													T		S	S	S						S	.	.	.				G	G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																																														.	.	.
Template SS confidence
								216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.							.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		P	H	L	S	V	G	C	V	R	N	D	Y	G	M	.	.	.	.	.	.	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q
Query Conservation																.	.	.	.	.	.
Alig confidence							.	.								.	.	.	.	.	.														.
Template Conservation							.	.																											.
Template Sequence		T	Y	G	S	L	.	.	F	D	A	T	Q	T	R	V	M	S	V	G	D	R	Q	L	V	K	V	A	A	W	Y	D	N	E	.	M	S	Y	T	A	Q	L	V	R	T	L	A	Y	L	A	E
Template Known Secondary structure				S			.	.			G	G	G							T	T												T	T	.
Template Predicted Secondary structure							.	.																											.
Template SS confidence
		287	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions