Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 51 Aligned Residues 298 % Identity 16% Template c3hjaB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi Resolution 2.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	.	.	.	.	.	.	.	.	.	.	Y	A	L	A	R	N	E	S	A	G	E	.	.	.	.	.	.	.	.	.	.	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence										.																						.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation										.
Template Sequence		M	K	L	A	I	N	G	F	.	G	R	I	G	R	N	V	F	K	I	A	F	E	R	G	I	D	I	V	A	I	N	D	L	T	D	P	K	T	L	A	H	L	L	K	Y	D	S	T	F	G	V	Y	N	K	K	V	E	S	R	D	G	A	I	V	V	D	G	R	E	I	K	I	I	A	E	R	D	P	K	N
Template Known Secondary structure										.	S													T	T									S	S													T	T	T				S	S						T	T					T	T									S	S	G	G	G
Template Predicted Secondary structure										.
Template SS confidence
		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
			61	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.															.	.	.	.	.
Query SS confidence		.															.	.	.	.	.
Query Sequence		.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	.	.	.	.	.	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T
Query Conservation		.															.	.	.	.	.
Alig confidence		.															.	.	.	.	.																												.	.																		.	.
Template Conservation																																																	.	.																		.	.
Template Sequence		L	P	W	A	K	L	G	I	D	V	V	I	E	S	T	G	V	F	S	S	A	T	S	D	K	G	G	Y	L	D	H	V	N	H	A	G	A	K	K	V	I	L	T	V	P	A	K	.	.	D	E	I	K	T	I	V	L	G	V	N	D	H	D	I	N	S	.	.	D	L	K	A	V	S	N	A	S	C	T	T
Template Known Secondary structure				T	T	T	T	T		S						S	S	S			S	S			T	T			G	G	G	G	T	T	T	S			S					S	S			S	.	.	S							T	T	T	S	G	G	G			T	.	.	T
Template Predicted Secondary structure																																																	.	.																		.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Sequence		N	C	L	A	P	L	A	K	V	L	H	E	S	F	G	I	E	Q	G	L	M	T	T	V	H	A	Y	T	N	D	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	D	L	P	H	S	D	L	R	R	A	R	A	A	A	L	S	I	I	P	T	S	T	G	A	A	K	A	.	.	.	.	.
Template Known Secondary structure																														T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				S	S	T	T	T	T	S	B	T	T	T	S								T	T	T	T	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.															.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																					.	.	.	.
Query SS confidence																																								.																					.	.	.	.
Query Sequence		R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	.	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	E	D	I	V	.	.	.	.	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G	T
Query Conservation																																								.																					.	.	.	.
Alig confidence		.	.	.	.	.																																		.																					.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	V	G	L	V	L	P	E	L	K	G	K	L	N	G	T	S	M	R	V	P	V	P	T	G	S	I	V	D	L	T	V	Q	L	K	K	K	D	V	T	K	E	E	I	N	S	V	L	R	K	A	S	E	T	P	E	L	K	G	I	L	G	Y	T	E	D	P	I	V	S	S	D	I	K	G	N
Template Known Secondary structure		.	.	.	.	.						G	G	G	T	T	T									S		S	S											S		T	T														T	T	S	T	T	T	T	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		P	H	L	S	V	G	C	V	R	N	D	Y	G	.	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V
Query Conservation															.
Alig confidence															.															.
Template Conservation																														.
Template Sequence		S	H	S	S	I	V	D	G	L	E	T	M	V	L	E	N	G	F	A	K	I	L	S	W	Y	D	N	E	.	F	G	Y	S	T	R	V	V	D	L	A	Q	K	L	V
Template Known Secondary structure				S					G	G	G					S	T	T										T	T	.
Template Predicted Secondary structure																														.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions