Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 37 Aligned Residues 298 % Identity 20% Template c3docD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate2 dehydrogenase from brucella melitensis Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		A	V	R	V	A	I	N	G	F	.	G	R	I	G	R	N	I	L	R	A	I	V	E	S	G	R	T	D	I	Q	V	V	A	I	N	D	L	G	P	V	E	T	N	A	H	L	L	R	Y	D	S	V	H	G	R	F	P	K	E	V	E	V	A	G	D	T	I	D	V	G	Y	G	P	I	K	V	H	A	V	R
Template Known Secondary structure									S		.	S														T			S									S	S													T	T	T		S		S	S						T	T				S	S	S	S								S
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
							61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																													.	.														.	.
Template Conservation																																																			.	.														.	.
Template Sequence		N	P	A	E	L	P	W	K	E	E	N	V	D	I	A	L	E	C	T	G	I	F	T	S	R	D	K	A	A	L	H	L	E	A	G	A	K	R	V	I	V	S	A	P	A	D	G	A	D	.	.	L	T	V	V	Y	G	V	N	N	D	K	L	T	.	.	K	D	H	L	V	I	S	N	A	S	C	T	T	N
Template Known Secondary structure			G	G	G	S						T		S						S	S	S			S					T						T		S					S	S			T	T		S	.	.		B			T	T	T	S	G	G	G			.	.	S	S		S
Template Predicted Secondary structure																																																			.	.														.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		C	L	A	P	V	A	Q	V	L	N	D	T	I	G	I	E	K	G	F	M	T	T	I	H	S	Y	T	G	D	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	T	M	H	K	D	L	Y	R	A	R	A	A	A	L	S	M	I	P	T	S	.	.	.	T	G	A	A	K	A	V	G	L
Template Known Secondary structure														T															T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					S	S	T	T	T	T	S		T	T	T	S						.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.															.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G	T
Query Conservation																																																							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																																										.	.	.	.	.	.											.	.
Template Conservation							.	.	.	.	.	.	.																																																										.	.
Template Sequence		V	L	P	E	L	.	.	.	.	.	.	.	K	G	K	L	D	G	V	A	I	R	V	P	T	P	N	V	S	V	V	D	L	T	F	I	A	K	R	E	T	T	V	E	E	V	N	N	A	I	R	E	A	A	N	G	R	L	K	G	I	L	G	Y	T	D	E	K	L	.	.	V	S	H	D	F	N	H	D	S
Template Known Secondary structure			S	G	G	G	.	.	.	.	.	.	.	T	T	S									S		S	S											S	S																	T	T	T	T	T	T						S			.	.		G	G	G	G	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.																																																										.	.
Template SS confidence
		220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	L	S	V	G	C	V	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		H	S	S	V	F	H	T	D	Q	T	K	V	M	D	G	T	M	V	R	I	L	S	W	Y	D	N	E	.	W	G	F	S	S	R	M	S	D	T	A	V	A	L	G	K
Template Known Secondary structure			S					G	G	G					T	T	T										T	T	.																T
Template Predicted Secondary structure																													.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions