Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 29 Aligned Residues 303 % Identity 20% Template c3cieC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																.	.
Template Sequence		T	A	T	L	G	I	N	G	.	F	G	R	I	G	R	L	V	L	R	A	C	M	E	R	.	.	N	D	I	T	V	V	A	I	N	D	P	F	M	D	V	E	Y	M	A	Y	L	L	K	Y	D	S	V	H	G	N	F	N	G	T	V	E	V	S	G	K	D	L	C	I	N	G	K	V	V	K	V	F	Q	A
Template Known Secondary structure										.		S												T		.	.	S	S									T	T	S													T	T	T		S		S	S						T	T					T	T
Template Predicted Secondary structure										.																.	.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		A	.	.	.	.	.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.																																							.	.																						.
Template Conservation																																														.	.																						.
Template Sequence		K	D	P	A	E	I	P	W	G	A	S	G	A	Q	I	V	C	E	S	T	G	V	F	T	T	E	E	K	A	S	L	H	L	K	G	G	A	K	K	V	I	I	S	A	.	.	P	P	K	D	N	V	P	M	Y	V	M	G	V	N	N	T	E	Y	D	P	S	.	K	F	N	V	I	S	N	A	S	C	T	T
Template Known Secondary structure		S	S	G	G	G							T								S	S	S			S					G	G	G	G	G	G	T							S	S	.	.			S	S	S			B			T	T	T	T	G	G	G			T	T	.	T		S
Template Predicted Secondary structure																																														.	.																						.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		N	C	L	A	P	L	A	K	I	I	N	D	K	F	G	I	V	E	G	L	M	T	T	V	H	S	L	T	A	N	Q	L	T	.	.	.	.	.	.	.	.	.	.	.	V	D	G	P	S	K	G	G	K	D	W	R	A	G	R	C	A	G	N	N	I	I	P	A	S	.	.	.	T	G	A	A	K	A	V	G
Template Known Secondary structure															T															T	T	S	B	S	.	.	.	.	.	.	.	.	.	.	.	S	S				T	T	S			S	G	G	G	S	B	S	S	S							.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.												.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G
Query Conservation																																																								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																																										.	.	.	.	.	.											.	.
Template Conservation								.	.	.	.	.	.	.																																																										.	.
Template Sequence		K	V	I	P	A	L	.	.	.	.	.	.	.	N	G	K	L	T	G	M	A	I	R	V	P	T	P	D	V	S	V	V	D	L	T	C	K	L	A	K	P	A	S	I	E	E	I	Y	Q	A	V	K	E	A	S	N	G	P	M	K	G	I	M	G	Y	T	S	D	D	V	.	.	V	S	T	D	F	I	G	C
Template Known Secondary structure				S	G	G	G	.	.	.	.	.	.	.	T	T	S									S		S	S											S	S																T	T	T	T	T	T	T						S			.	.		G	G	G	G	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.																																																										.	.
Template SS confidence
		222	.	.	.	.	.								.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	H	L	S	V	G	C	V	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E	Y	L
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		K	Y	S	S	I	F	D	K	N	A	C	I	A	L	N	D	S	F	V	K	L	I	S	W	Y	D	N	E	.	S	G	Y	S	N	R	L	V	D	L	A	V	Y	V	A	S	R	G	L
Template Known Secondary structure				S					G	G	G				S	S	S	S										T	T	.																	T
Template Predicted Secondary structure																														.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions