Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 17 Aligned Residues 300 % Identity 20% Template c2gd1P_ PDB info PDB header:oxidoreductase(aldehyde(d)-nad(a)) Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																								.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																.	.
Template Sequence		A	V	K	V	G	I	N	G	.	F	G	R	I	G	R	N	V	F	R	A	A	L	K	N	.	.	P	D	I	E	V	V	A	V	N	D	L	T	D	A	N	T	L	A	H	L	L	K	Y	D	S	V	H	G	R	L	D	A	E	V	S	V	N	G	N	N	L	V	V	N	G	K	E	I	I	V	K	A	E	R
Template Known Secondary structure										.		S											T	T		.	.	T	T									S	S													T	T	T				S	S						T	T					T	T									S
Template Predicted Secondary structure										.																.	.
Template SS confidence
		0	.	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		61	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		E	F	D	W	T	.	.	.	.	.	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.																																								.	.															.
Template Conservation																																																			.	.															.
Template Sequence		D	P	E	N	L	A	W	G	E	I	G	V	D	I	V	V	E	S	T	G	R	F	T	K	R	E	D	A	A	K	H	L	E	A	G	A	K	K	V	I	I	S	A	P	A	K	N	E	D	.	.	I	T	I	V	M	G	V	N	Q	D	K	Y	D	P	.	K	A	H	H	V	I	S	N	A	S	C	T	T	N
Template Known Secondary structure			G	G	G							T								S	S	S			B					T					T	T		S					S	S			B	S		S	.	.					T	T	T	S	G	G	G			T	.	T	T
Template Predicted Secondary structure																																																			.	.															.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Sequence		C	L	A	P	F	A	K	V	L	H	E	Q	F	G	I	V	R	G	M	M	T	T	V	H	S	Y	T	N	D	Q	R	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	P	H	K	D	L	R	R	A	R	A	A	A	E	S	I	I	P	T	T	T	G	A	A	.	.	.	.	.	.	.	.
Template Known Secondary structure																													T	T	S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				S	S	S	S	T	T	S	B	T	T	T	S							S	T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.															.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G	T	P	H	L
Query Conservation																																																							.	.	.
Alig confidence		.	.																																																				.	.	.
Template Conservation		.	.
Template Sequence		.	.	K	A	V	A	L	V	L	P	E	L	K	G	K	L	N	G	M	A	M	R	V	P	T	P	N	V	S	V	V	D	L	V	A	E	L	E	K	E	V	T	V	E	E	V	N	A	A	L	K	A	A	A	E	G	E	L	K	G	I	L	A	Y	S	E	E	P	L	V	S	R	D	Y	N	G	S	T	V	S
Template Known Secondary structure		.	.	G	G	G	T	T	T	S	G	G	G	T	T	T									S		S	S											S	S																	T	T	T	B	T	T						S				G	G	G	G	T	T			S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		293	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		S	V	G	C	V	.	.	.	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E	Y	L
Query Conservation							.	.	.
Alig confidence				.	.		.	.	.																			.
Template Conservation				.	.																							.
Template Sequence		S	T	.	.	I	D	A	L	S	T	M	V	I	D	G	K	M	V	K	V	V	S	W	Y	D	N	.	E	T	G	Y	S	H	R	V	V	D	L	A	A	Y	I	A	S	K	G	L
Template Known Secondary structure				.	.			G	G	G					T	T	T										T	.	T
Template Predicted Secondary structure				.	.																							.
Template SS confidence
		290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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