Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 49 Aligned Residues 300 % Identity 16% Template c2ep7B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5 Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																.	.
Template Sequence		A	I	K	V	G	I	N	G	.	F	G	R	I	G	R	S	F	F	R	A	S	W	G	R	.	.	E	E	I	E	I	V	A	I	N	D	L	T	D	A	K	H	L	A	H	L	L	K	Y	D	S	V	H	G	I	F	K	G	S	V	E	A	K	D	D	S	I	V	V	D	G	K	E	I	K	V	F	A	Q	K
Template Known Secondary structure										.		S										T	T	T		.	.	T	T									S	S													T	T	T				S	S						S	S					T	T									S
Template Predicted Secondary structure										.																.	.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
							61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																													.	.															.
Template Conservation																																																			.	.															.
Template Sequence		D	P	S	Q	I	P	W	G	D	L	G	V	D	V	V	I	E	A	T	G	V	F	R	D	R	E	N	A	S	K	H	L	Q	G	G	A	K	K	V	I	I	T	A	P	A	K	N	P	D	.	.	I	T	V	V	L	G	V	N	E	E	K	Y	N	P	.	K	E	H	N	I	I	S	N	A	S	C	T	T	N
Template Known Secondary structure		S	G	G	G							T		S						S	S	S			S					T	T	T	T	T	T	T		S					S	S			S	S		S	.	.					T	T	T	T	G	G	G			T	.	T	T
Template Predicted Secondary structure																																																			.	.															.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Sequence		C	L	A	P	C	V	K	V	L	N	E	A	F	G	V	E	K	G	Y	M	V	T	V	H	A	Y	T	N	D	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	L	P	H	K	D	F	R	R	A	R	A	A	A	I	N	I	V	P	T	T	T	G	A	A	K	A	.	.	.	.	.	.
Template Known Secondary structure																													T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				S	S	T	T	T	T	S	B	G	G	G									T	T	T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.															.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.											.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																									.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.															.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	.	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G
Query Conservation																																									.															.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																				.															.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	G	E	V	I	P	E	L	K	G	K	L	D	G	T	A	R	R	V	P	V	P	D	G	S	L	I	D	L	T	V	V	V	N	K	A	P	S	S	V	E	E	V	N	E	K	F	R	E	A	A	Q	K	Y	R	E	S	G	K	V	Y	L	K	E	I	L	Q	Y	C	E	D	P	I	V	S	T
Template Known Secondary structure		.	.	.	.	G	G	G	T	S	G	G	G	T	T	T									S		S	S											S	S			S																		T	T			G	G	G	T	T	S						S				G	G
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	S	G	T	P	H	L	S	V	G	C	V	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		D	I	V	G	N	P	H	S	A	I	F	D	A	P	L	T	Q	V	I	D	N	L	V	H	I	A	A	W	Y	D	N	E	.	W	G	Y	S	C	R	L	R	D	L	V	I	Y	L	A	E	R
Template Known Secondary structure		G	G	T	T				S					G	G	G					T	T										T	T	.																T
Template Predicted Secondary structure																																		.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions