Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 27 Aligned Residues 300 % Identity 19% Template c2d2iO_ PDB info PDB header:oxidoreductase Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+ Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																								.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	E	G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	N	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.									.
Template Sequence		M	T	.	.	I	R	V	A	I	N	G	F	.	G	R	I	G	R	N	F	L	R	C	W	F	G	R	Q	N	T	D	L	E	V	V	A	I	N	N	T	S	D	A	R	T	A	A	H	L	L	E	Y	D	S	V	L	G	R	F	N	A	D	I	S	Y	D	E	N	S	I	T	V	N	G	K	T	M	K	I	V
Template Known Secondary structure				.	.									.	S												T		S	S		S									S	S													T	T	T					S						T	T					T	T
Template Predicted Secondary structure				.	.									.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		58	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		D	A	A	.	.	.	.	.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.																																							.																						.
Template Conservation																																																.																						.
Template Sequence		C	D	R	N	P	L	N	L	P	W	K	E	W	D	I	D	L	V	I	E	S	T	G	V	F	V	T	A	E	G	A	S	K	H	I	Q	A	G	A	K	K	V	L	I	T	A	.	P	G	K	A	E	G	V	G	T	Y	V	I	G	V	N	D	S	E	Y	R	H	.	E	D	F	A	V	I	S	N	A	S	C
Template Known Secondary structure				S		G	G	G			T	T	T	T	T								S	S	S			B										T	T		S					S	S	.			B	S	S	S						T	T	T	T	G	G	G			T	.	T	T		S
Template Predicted Secondary structure																																																.																						.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		T	T	N	C	L	A	P	V	A	K	V	L	H	D	N	F	G	I	I	K	G	T	M	T	T	T	H	S	Y	T	L	D	Q	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	S	H	R	D	L	R	R	A	R	A	A	A	V	N	I	V	P	T	T	T	G	.	.	.	.	.	.	.
Template Known Secondary structure																																T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S				S	S	T	T	T	T	S		G	G	G									.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190															.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		E	R	R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S
Query Conservation																																																										.	.	.	.	.
Alig confidence		.	.	.																																																						.	.	.	.	.															.	.
Template Conservation		.	.	.																																																																									.	.
Template Sequence		.	.	.	A	A	K	A	V	A	L	V	I	P	E	L	K	G	K	L	N	G	I	A	L	R	V	P	T	P	N	V	S	V	V	D	L	V	V	Q	V	E	K	P	T	I	T	E	Q	V	N	E	V	L	Q	K	A	S	Q	T	T	M	K	G	I	I	K	Y	S	D	L	P	L	V	S	S	.	.	D	F	R
Template Known Secondary structure		.	.	.									S	G	G	G	T	T	S									S		S	S											S	S																	T	T	T	T	T	T						S				G	G	.	.	G	G	T
Template Predicted Secondary structure		.	.	.																																																																									.	.
Template SS confidence
					215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		G	T	P	H	L	S	V	G	C	V	R	N	D	Y	G	.	.	.	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E
Query Conservation																	.	.	.
Alig confidence									.	.							.	.	.															.
Template Conservation									.	.																								.
Template Sequence		G	T	D	E	S	S	I	.	.	V	D	S	S	L	T	L	V	M	D	G	D	L	V	K	V	I	A	W	Y	D	N	E	.	W	G	Y	S	Q	R	V	V	D	L	A	E	L	A	A	R	K
Template Known Secondary structure		T			S	S			.	.			G	G	G					T	T	T										T	T	.																	T
Template Predicted Secondary structure									.	.																								.
Template SS confidence
		290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions