Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 34 Aligned Residues 269 % Identity 15% Template c2czcD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 pyrococcus horikoshii ot3 Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	E	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A	E	F	D	W	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																.	.
Template Sequence		K	V	K	V	G	V	N	G	.	Y	G	T	I	G	K	R	V	A	Y	A	V	T	K	Q	.	.	D	D	M	E	L	I	G	I	T	K	T	K	P	D	F	E	A	Y	R	A	K	E	L	G	I	P	V	Y	A	A	S	E	E	F	I	P	R	F	E	K	E	G	F	E	V	A	G	T	L	N	D	L	L	E
Template Known Secondary structure										.		S												T		.	.	S	S									S	S											T	T						S	S	G	G	G							T	T				S		B						T
Template Predicted Secondary structure										.																.	.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S	Q	L	L	A	A	L	K	P	L	I
Query Conservation
Alig confidence																																				.	.	.																.
Template Conservation																																				.	.	.																.
Template Sequence		K	V	D	I	I	V	D	A	T	P	G	G	I	G	A	K	N	K	P	L	Y	E	K	A	G	V	K	A	I	F	Q	G	G	E	.	.	.	K	A	D	V	A	E	V	S	F	V	A	Q	A	N	Y	.	E	A	A	L	G	K	N	Y	V	R	V	V	S	C	N	T	T	G	L	V	R	T	L	S	A	I	R
Template Known Secondary structure		T		S							S	T	T												T	T							T	T	S	.	.	.		G	G	G	S	S									G	.	G	G	G	T	T		S																				G
Template Predicted Secondary structure																																				.	.	.																.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R	I	V	D	E	V	R	K	I	L	Q
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Sequence		E	Y	A	D	Y	V	Y	A	V	M	I	R	R	A	A	D	P	N	D	T	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	I	N	A	I	K	P	T	V	E	V	P	S	H	H	G	P	D	V	Q	T	V	I	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G												S	S		T	T			S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S							S	S	S		T						T	T	T	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.										.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.
Query Sequence		D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	.	.	.	.	.	.	.	.	.	G	T	P	H	L	S	V	G	C
Query Conservation																																																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																																													.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	P	I	N	I	E	T	M	A	F	V	V	P	T	T	L	M	H	V	H	S	V	M	V	E	L	K	K	P	L	T	K	D	D	V	I	D	I	F	E	N	T	T	R	V	L	L	F	E	K	E	K	G	F	D	S	T	A	Q	I	I	E	F	A	R	D	L	H	R	E	W	N	N	L	Y	E	I	A	V
Template Known Secondary structure		.	.												S			S											S	S													T	S	T	T						G	G	G	T			S											T	T		G	G	G				S
Template Predicted Secondary structure		.	.
Template SS confidence
				201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		297	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		V	R	N	D	Y	G	.	M	P	E	Q	V	Q	F	W	S	V	A	D	N
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		W	K	E	S	I	N	I	K	G	N	R	L	F	Y	I	Q	A	V	H	Q
Template Known Secondary structure			G	G	G					T	T										T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions