Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 50 Aligned Residues 298 % Identity 20% Template c1obfO_ PDB info PDB header:glycolytic pathway Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.73 resolution. Resolution 1.7 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40																								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																											.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence																											.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	.	F	P	V	G	E	I	Y	A	L	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	.	.	.
Query Conservation																											.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence										.																	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation										.
Template Sequence		T	I	R	V	A	I	N	G	.	Y	G	R	I	G	R	N	I	L	R	A	H	Y	E	G	G	K	S	H	D	I	E	I	V	A	I	N	D	L	G	D	P	K	T	N	A	H	L	T	R	Y	D	T	A	H	G	K	F	P	G	T	V	S	V	N	G	S	Y	M	V	V	N	G	D	K	I	R	V	D	A	N
Template Known Secondary structure										.		S													T	T	S		S	S									S	S													T	T	T				S	S						T	T					T	T
Template Predicted Secondary structure										.
Template SS confidence
		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		57	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		Q	D	A	A	E	F	D	W	T	Q	.	.	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T
Query Conservation												.	.
Alig confidence												.	.																													.																									.	.	.
Template Conservation																																										.																									.	.	.
Template Sequence		R	N	P	A	Q	L	P	W	G	A	L	K	V	D	V	V	L	E	C	T	G	F	F	T	T	K	E	K	A	G	A	H	I	K	G	G	A	K	K	V	.	I	I	S	A	P	G	G	A	D	V	D	A	T	V	V	Y	G	V	N	H	G	T	L	K	.	.	.	S	T	D	T	V	I	S	N	A	S	T	T
Template Known Secondary structure		S		G	G	G	S		T	T	T	T	T		S						S	S	S			S											T		S			.			S	S				T	T	S	S					T	T	T	S	G	G	G			.	.	.	T	T
Template Predicted Secondary structure																																										.																									.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	L	A	A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template Sequence		N	C	L	A	P	L	V	K	P	L	N	D	K	L	G	L	Q	D	G	L	M	T	T	V	H	A	Y	T	N	N	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	D	V	Y	H	E	D	L	R	R	A	R	S	A	T	M	S	M	I	P	T	.	.	.	K	T	G	A	A	A	A	V	G
Template Known Secondary structure															T															T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					S	S	T	T	T	T	S		T	T	T						.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.															.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G
Query Conservation																																																								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																																										.	.	.	.	.	.									.	.	.
Template Conservation								.	.	.	.	.	.	.																																																								.	.	.
Template Sequence		D	V	L	P	E	L	.	.	.	.	.	.	.	D	G	K	L	N	G	Y	A	I	R	V	P	T	I	N	V	S	I	V	D	L	S	F	V	A	K	R	N	T	T	V	E	E	V	N	G	I	L	K	A	A	S	E	G	E	L	K	G	I	L	D	Y	N	T	E	.	.	.	P	L	V	S	V	D	Y	N	H
Template Known Secondary structure					G	G	G	.	.	.	.	.	.	.	T	T	S									S		S	S											S	S																	T	T	T	T	T	T						S	.	.	.				G	G	G	G	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.																																																								.	.	.
Template SS confidence
		220	.	.	.	.	.								.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	H	L	S	V	G	C	V	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		D	P	A	S	S	T	V	D	A	S	L	T	K	V	S	G	R	L	V	K	V	S	S	W	Y	D	N	E	.	W	G	F	S	N	R	M	L	D	T	T	V	A	L	M	S	A
Template Known Secondary structure					S					G	G	G					T	T										T	T	.
Template Predicted Secondary structure																														.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions