Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 43 Aligned Residues 295 % Identity 21% Template c1ihxD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.												.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	.	.	.	.	.	.	.	.	.	.	.	Y	A	L	A	R	N	E	S	A	G	E	.	.	.	.	.	.	.	.	.	.	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence									.																						.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation									.
Template Sequence		K	I	G	I	N	G	F	.	G	R	I	G	R	L	V	L	R	T	A	L	E	M	G	A	Q	V	V	A	V	N	D	P	F	I	A	L	E	Y	M	V	Y	M	F	K	Y	D	S	T	H	G	M	F	K	G	E	V	K	V	E	D	G	A	L	V	V	D	G	K	K	I	T	V	F	N	E	M	K	P	E	N
Template Known Secondary structure									.	S											T	T	T	T									T	T	S													T	T	T					S						S	S					T	T									S	S	G	G	G
Template Predicted Secondary structure									.
Template SS confidence
		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
			61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S	Q	L	L	A
Query Conservation		.
Alig confidence		.																																								.	.	.																			.	.
Template Conservation																																										.	.	.																			.	.
Template Sequence		I	P	W	S	K	A	G	A	E	Y	I	V	E	S	T	G	V	F	T	T	I	E	K	A	S	A	H	F	K	G	G	A	K	K	V	I	I	S	A	P	.	.	.	S	A	D	A	P	M	F	V	C	G	V	N	L	E	K	Y	S	K	.	.	D	M	K	V	V	S	N	A	S	C	T	T	N	C	L	A	P
Template Known Secondary structure								T								S	S	S			S					G	G	G	G	T	T	T		S					S	S		.	.	.		S	S	S		B			T	T	T	S	G	G	G			T	.	.	T
Template Predicted Secondary structure																																										.	.	.																			.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R	I	V	D	E
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		V	A	K	V	L	H	E	N	F	E	I	V	E	G	L	M	T	T	V	H	A	V	T	A	T	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	D	G	P	S	A	K	D	W	R	G	G	R	G	A	A	Q	N	I	I	P	S	.	.	.	S	T	G	A	A	K	A	V	G	K	V	I	P	E
Template Known Secondary structure																									T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				T	T		T	G	G	G	S	B	T	T	T						.	.	.												S	G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.														.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G	T	P	H	L	S
Query Conservation																																																			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																																										.	.	.	.	.	.									.	.	.
Template Conservation			.	.	.	.	.	.	.																																																								.	.	.
Template Sequence		L	.	.	.	.	.	.	.	D	G	K	L	T	G	M	A	F	R	V	P	T	P	N	V	S	V	V	D	L	T	V	R	L	G	K	E	C	S	Y	D	D	I	K	A	A	M	K	T	A	S	E	G	P	L	Q	G	V	L	G	Y	T	E	D	.	.	.	D	V	V	S	C	D	F	T	G	D	N	R	S	S
Template Known Secondary structure		G	.	.	.	.	.	.	.	T	T	S									S		S	S											S	S															T	T	T	T	T	T	T	T						S	.	.	.				G	G	G	G	T	T				S
Template Predicted Secondary structure			.	.	.	.	.	.	.																																																								.	.	.
Template SS confidence
		221								.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290
		294	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		V	G	C	V	R	N	D	Y	G	.	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q
Query Conservation											.
Alig confidence											.															.
Template Conservation																										.
Template Sequence		I	F	D	A	K	A	G	I	Q	L	S	K	T	F	V	K	V	V	S	W	Y	D	N	E	.	F	G	Y	S	Q	R	V	I	D	L	I	K	H	M	Q	K
Template Known Secondary structure					T	T	T						T	T										T	T	.
Template Predicted Secondary structure																										.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions