Job Description P08390 Confidence 99.96% Date Thu Jan 5 11:01:25 GMT 2012 Rank 58 Aligned Residues 295 % Identity 18% Template c1i32D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	E	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		P	I	K	V	G	I	N	G	F	.	G	R	I	G	R	M	V	F	Q	A	I	C	D	Q	G	L	I	G	T	E	I	D	V	V	A	V	V	D	M	S	T	N	A	E	Y	F	A	Y	Q	M	K	H	D	T	V	H	G	R	P	K	Y	T	V	E	A	V	K	S	S	P	S	V	E	T	A	D	V	L	V	V
Template Known Secondary structure											.	S													T	T		B	T	T	T									S															T	T	T		S		S	S							S	S	T	T		S	S
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
			44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R
Query Conservation		.
Alig confidence		.																	.																																								.	.																					.
Template Conservation																			.																																								.	.																					.
Template Sequence		N	G	H	R	I	K	C	V	K	A	Q	R	N	P	A	D	L	.	P	W	G	K	L	G	V	D	Y	V	I	E	S	T	G	L	F	T	D	K	L	K	A	E	G	H	I	K	G	G	A	K	K	V	V	I	S	A	P	.	.	A	S	G	G	A	K	T	I	V	M	G	V	N	Q	H	E	Y	S	P	A	.
Template Known Secondary structure		T	T										S	S	G	G	G	S	.						T								S	S	S			B					T					T	T		S					S	S		.	.		B	S	S						T	T	T	S	G	G	G			T	T	.
Template Predicted Secondary structure																			.																																								.	.																					.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		N	R	N	V	I	A	V	P	D	S	L	T	S	Q	L	L	A	A	L	K	P	L	.	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P
Query Conservation																								.
Alig confidence																								.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	H	H	V	V	S	N	A	S	C	T	T	N	C	L	A	P	I	V	H	V	L	T	K	E	N	F	G	I	E	T	G	L	M	T	T	I	H	S	Y	T	A	T	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	D	G	V	S	L	K	D	W	R	G	G	R	A	A	A	V	N	I	I	P
Template Known Secondary structure		T		S																						T	T				S												T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				S	S		T	G	G	G	S	B	G	G	G
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.														.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence		L	L	P	D	S	E	G	S	V	R	E	E	R	R	I	V	D	E	V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	E	D	I	V	L	S	E
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence		.	.	.																	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation		.	.	.																	.	.	.	.	.	.	.
Template Sequence		.	.	.	S	T	T	G	A	A	K	A	V	G	M	V	I	P	S	T	.	.	.	.	.	.	.	K	G	K	L	T	G	M	S	F	R	V	P	T	P	D	V	S	V	V	D	L	T	F	R	A	T	R	D	T	S	I	Q	E	I	D	K	A	I	K	K	A	A	Q	T	Y	M	K	G	I	L	G	F	T	D
Template Known Secondary structure		.	.	.				S									S	G	G	G	.	.	.	.	.	.	.	T	T	T									S		S	S											S	S																	T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.																	.	.	.	.	.	.	.
Template SS confidence
					224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.								240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.										.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.
Query Sequence		E	N	E	F	P	T	Q	V	G	D	A	S	G	T	P	H	L	S	V	G	C	V	R	N	D	Y	G	M	.	.	.	.	.	.	.	.	.	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E
Query Conservation																														.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																.	.	.	.						.	.	.	.	.	.	.	.	.														.
Template Conservation			.	.	.																.	.	.	.																												.
Template Sequence		E	.	.	.	E	L	V	S	A	D	F	I	N	D	N	R	S	S	V	.	.	.	.	Y	D	S	K	A	T	L	Q	N	N	L	P	G	E	K	R	F	F	K	V	V	S	W	Y	D	N	E	.	W	A	Y	S	H	R	V	V	D	L	V	R	Y	M	A	A	K
Template Known Secondary structure		S	.	.	.				G	G	G	G	T	T				S			.	.	.	.								T	T	S		T	T		S	S										T	T	.
Template Predicted Secondary structure			.	.	.																.	.	.	.																												.
Template SS confidence
		294				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions