Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 28 Aligned Residues 300 % Identity 17% Template c1cerC_ PDB info PDB header:oxidoreductase (aldehyde(d)-nad(a)) Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	L	A	R	N	E	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A	.	.	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence										.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation										.
Template Sequence		M	K	V	G	I	N	G	F	.	G	R	I	G	R	Q	V	F	R	I	L	H	S	R	G	V	E	V	A	L	I	N	D	L	T	D	N	K	T	L	A	H	L	L	K	Y	D	S	I	Y	H	R	F	P	G	E	V	A	Y	D	D	Q	Y	L	Y	V	D	G	K	A	I	R	A	T	A	V	K	D	P	K	E
Template Known Secondary structure										.	S													T	T									S	S													T	T	T		S		S	S						S	S					T	T									S		G	G	G
Template Predicted Secondary structure										.
Template SS confidence
		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
			61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	F	D	W	T	Q	A	Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S	Q	L	L	A
Query Conservation		.
Alig confidence		.																																							.	.																						.
Template Conservation																																									.	.																						.
Template Sequence		I	P	W	A	E	A	G	V	G	V	V	I	E	S	T	G	V	F	T	D	A	D	K	A	K	A	H	L	E	G	G	A	K	K	V	I	I	T	A	.	.	P	A	K	G	E	D	I	T	I	V	M	G	V	N	H	E	A	Y	D	P	S	.	R	H	H	I	I	S	N	A	S	C	T	T	N	S	L	A	P
Template Known Secondary structure		S						T								S	S	S			B					G	G	G	G	G	G	T		S					S	S	.	.			B	S		S					T	T	T	S	G	G	G			T	T	.	T									T	T
Template Predicted Secondary structure																																									.	.																						.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	P	L	I	D	Q	G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R	I	V	D	E
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence		V	M	K	V	L	E	E	A	F	G	V	E	K	A	L	M	T	T	V	H	S	Y	T	N	D	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	L	P	H	K	D	L	R	R	A	R	A	A	A	I	N	I	I	P	T	T	.	.	.	T	G	A	A	K	A	T	A	L	V	L	P	S
Template Known Secondary structure										T															T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				S	S	T	T	T	T	S	B	G	G	G							.	.	.												G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.															.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.							.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		V	R	K	I	L	Q	D	E	G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	.	.	.	.	.	.	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	A	S	G	T	P	H	L	S
Query Conservation																																																			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.																																										.	.	.	.	.	.									.	.	.
Template Conservation			.	.	.	.	.	.	.																																																								.	.	.
Template Sequence		L	.	.	.	.	.	.	.	K	G	R	F	D	G	M	A	L	R	V	P	T	A	T	G	S	I	S	D	I	T	A	L	L	K	R	E	V	T	A	E	E	V	N	A	A	L	K	A	A	A	E	G	P	L	K	G	I	L	A	Y	T	E	D	.	.	.	E	I	V	L	Q	D	I	V	M	D	P	H	S	S
Template Known Secondary structure		G	.	.	.	.	.	.	.	T	T	T									S		S	S											S	S																	T	T	T	B	T	T						S	.	.	.				G	G	G	S	T	T				S
Template Predicted Secondary structure			.	.	.	.	.	.	.																																																								.	.	.
Template SS confidence
		221								.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	C	V	R	N	D	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N	V	R	F	G	G	A	L	M	A	V	K	I	A	E	K	L	V	Q	E	Y	L
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		I	V	D	A	K	L	T	K	A	L	G	N	M	V	K	V	F	A	W	Y	D	N	E	.	W	G	Y	A	N	R	V	A	D	L	V	E	L	V	L	R	K	G	V
Template Known Secondary structure					G	G	G					T	T										T	T	.																	T
Template Predicted Secondary structure																									.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions