Job Description P08390 Confidence 100.00% Date Thu Jan 5 11:01:25 GMT 2012 Rank 25 Aligned Residues 272 % Identity 17% Template c1b7gO_ PDB info PDB header:oxidoreductase Chain: O: PDB Molecule:protein (glyceraldehyde 3-phosphate dehydrogenase); PDBTitle: glyceraldehyde 3-phosphate dehydrogenase Resolution 2.05 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	N	I	A	V	L	G	A	T	G	A	V	G	E	A	L	L	E	T	L	A	E	R	Q	F	P	V	G	E	I	Y	A	L	A	R	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	G	E	Q	L	R	F	G	G	K	T	I	T	V	Q	D	A	A	E	F	D	W	T	Q	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																.	.
Template Sequence		V	N	V	A	V	N	G	.	Y	G	T	I	G	K	R	V	A	D	A	I	I	K	Q	.	.	P	D	M	K	L	V	G	V	A	K	T	S	P	N	Y	E	A	F	I	A	H	R	R	G	I	R	I	Y	V	P	Q	Q	S	I	K	K	F	E	E	S	G	I	P	V	A	G	T	V	E	D	L	I	K	T	S
Template Known Secondary structure									.		S												T		.	.	T	T									S	S		S									T	T							G	G	G						T	T	T
Template Predicted Secondary structure									.																.	.
Template SS confidence
		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	F	F	V	A	G	K	E	A	T	A	A	W	V	E	E	A	T	N	S	G	C	L	V	I	D	S	S	G	L	F	A	L	E	P	D	V	P	L	V	V	P	E	V	N	P	F	V	L	T	D	Y	R	N	R	N	V	I	A	V	P	D	S	L	T	S	Q	L	L	A	A	L	K	P	L	I	D	Q
Query Conservation
Alig confidence																																				.																		.	.	.
Template Conservation																																				.																		.	.	.
Template Sequence		D	I	V	V	D	T	T	P	N	G	V	G	A	Q	Y	K	P	I	Y	L	Q	L	Q	R	N	A	I	F	Q	G	G	E	K	A	.	E	V	A	D	I	S	F	S	A	L	C	N	Y	N	E	A	L	.	.	.	G	K	K	Y	I	R	V	V	S	C	N	T	T	A	L	L	R	T	I	C	T	V	N	K	V
Template Known Secondary structure		S							S	T	T												T	T							T	T	S		G	.	G	G	S	S													T	.	.	.	T		S																					T	T
Template Predicted Secondary structure																																				.																		.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	L	S	R	I	S	V	T	S	L	I	S	A	S	A	Q	G	K	K	A	V	D	A	L	A	G	Q	S	A	K	L	L	N	G	I	P	I	D	E	E	D	F	F	G	R	Q	L	A	F	N	M	L	P	L	L	P	D	S	E	G	S	V	R	E	E	R	R	I	V	D	E	V	R	K	I	L	Q	D	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		S	K	V	E	K	V	R	A	T	I	V	R	R	A	A	D	Q	K	E	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	P	I	N	S	L	V	P	D	P	A	T	V	P	S	.	.	.	.	.	.	.	.	.	.	.	.	H	H	A	K	D	V	N	S	V	I	.	.	R
Template Known Secondary structure		S													S	S		T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S					S	S	S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	T							T	T	S	.	.	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.													.	.	.	.	.	.	.	.	200	.			.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.							.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																												.	.	.	.	.	.																.
Query SS confidence																																																												.	.	.	.	.	.																.
Query Sequence		G	L	M	I	S	A	S	V	V	Q	A	P	V	F	Y	G	H	A	Q	M	V	N	F	E	A	L	R	P	L	A	A	E	E	A	R	D	A	F	V	Q	G	E	D	I	V	L	S	E	E	N	E	F	P	T	Q	V	G	D	.	.	.	.	.	.	A	S	G	T	P	H	L	S	V	G	C	V	R	N	D	.
Query Conservation																																																												.	.	.	.	.	.																.
Alig confidence																																																												.	.	.	.	.	.																.
Template Conservation
Template Sequence		N	L	D	I	A	T	M	A	V	I	A	P	T	T	L	M	H	M	H	F	I	N	I	T	L	K	D	K	V	E	K	K	D	I	L	S	V	L	E	N	T	P	R	I	V	L	I	S	S	K	Y	D	A	E	A	T	A	E	L	V	E	V	A	R	D	L	K	R	D	R	N	D	I	P	E	V	M	I	F	S
Template Known Secondary structure		T											S		S	S											S	S													T		T	T						S	S	S	S			S											T	T		G	G	G				S					G
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
					301	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	Y	G	M	P	E	Q	V	Q	F	W	S	V	A	D	N
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		D	S	I	Y	V	K	D	D	E	V	M	L	M	Y	A	V	H	Q
Template Known Secondary structure		G	G					T	T										T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions