Job Description P76594 Confidence 97.87% Date Thu Jan 5 12:24:56 GMT 2012 Rank 207 Aligned Residues 190 % Identity 15% Template c3tqtB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii Resolution 1.88 Å

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		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	N	W	C	G	E	H	S	S	Q	E	A	R	R	L	F	S	E	A	G	L	P	T	Y	R	T	P	E	G	T	I	T	A	F	M	H	M	V	E	Y	R	R	N	Q	K	Q	L	R	E	T	P	A	L	P	S	N	L	T	S	N	T	A	E	A	H	L	L	L	Q	Q	A	I	A	E	G	A	T	S
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	M	V	H	G	T	Q	G	E	D	G	A	L	Q	G	L	L	E	L	L	N	L	P	Y	V	G	A	N	V	Q	S	S	A	V	C	M	E	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	T	T	T	T	S	S									T	T			B	S	S											S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.						.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		L	D	T	H	E	V	Q	P	I	L	Q	A	Y	G	M	N	T	L	P	T	W	I	A	S	D	S	T	E	A	V	H	I	A	E	Q	.	.	.	.	.	I	G	Y	P	V	A	L	K	L	R	S	P	D	I	P	H	K	S	E	V	Q	G	V	M	L	Y	L	R	T	A	N	E	V	Q	Q	A	A	N	A	I
Query Conservation																																					.	.	.	.	.
Alig confidence		.	.	.	.																																.	.	.	.	.										.	.	.	.	.												.
Template Conservation		.	.	.	.																																														.	.	.	.	.												.
Template Sequence		.	.	.	.	L	T	K	T	V	L	R	A	G	G	I	P	V	V	D	W	H	T	L	S	P	R	D	A	T	E	G	V	Y	Q	R	L	L	D	R	W	G	T	S	E	L	F	V	K	A	.	.	.	.	.	V	S	L	G	S	S	V	A	T	L	P	.	V	K	T	E	T	E	F	T	K	A	V	K	E	V
Template Known Secondary structure		.	.	.	.									T	T			B								T	T	S			T	T										S		S							.	.	.	.	.	S	S			S	G	G	G				.			S
Template Predicted Secondary structure		.	.	.	.																																														.	.	.	.	.												.
Template SS confidence
						143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	R	V	K	M	A	W	P	Q	A	R	V	H	G	L	L	V	Q	S	M	A	N	R	A	G	A	Q	E	L	R	V	V	V	E	H	D	P	V	F	G	P	L	I	M	L	G	E	G	G	V	E	W	R	P	E	D	Q	A	V	V	A	L	P	P	L	N	M	N	L	A	R	Y	L	V	I	Q	G	I	K
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	Y	D	D	R	.	.	.	.	.	.	.	.	.	L	M	V	E	P	R	I	.	.	.	R	G	R	E	I	E	C	A	V	L	G	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	K	A	S	L	P	G	E	I	I	T	T	T	T	S	E	S	V	T	K	Q	I	Q	Q	I	A	I	D
Template Known Secondary structure		T	T	T		S		.	.	.	.	.	.	.	.	.								.	.	.		S										S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.								.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.										.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.														.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	K	I	R	A	R	S	A	L	R	P	L	D	V	A	G	L	S	Q	L	L	V	Q	V	S	N	L	I	V	D	C	P	E	I	Q	R	L	D	I	H	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	K	M	V	H	C	S	G	M	A	R	V	D	F	.	.	.	.	.	.	.	.	.	.	.	.	F	V	T	P	N	N	K	V	L	V	N	E	I	N	T
Template Known Secondary structure						T	T										.	.	.	.	.	.	.	.	.	.	.	.				T	T										S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions