Job Description P76594 Confidence 96.97% Date Thu Jan 5 12:24:56 GMT 2012 Rank 298 Aligned Residues 151 % Identity 11% Template c3k3pA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans Resolution 2.23 Å

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		482	.	.	.	.	.	.	.	490	.	.	.		.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.					.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure														.																							.	.	.	.
Query SS confidence														.																							.	.	.	.
Query Sequence		D	T	H	E	V	Q	P	I	L	Q	A	Y	.	G	M	N	T	L	P	T	W	I	A	S	D	S	T	E	A	V	H	I	A	E	Q	.	.	.	.	I	G	Y	P	V	A	L	K	L	R	S	P	D	I	P	H	K	S	E	V	Q	G	V	M	L	Y	L	R	T	A	N	E	V	Q	Q	A	A	N	A	I	F
Query Conservation														.																							.	.	.	.
Alig confidence														.																							.	.	.	.											.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.					.
Template Sequence		D	K	I	T	T	N	Q	V	L	E	S	A	T	T	I	P	Q	V	A	Y	V	A	L	I	E	G	E	P	L	E	S	K	L	A	E	V	E	E	K	L	I	Y	P	V	F	V	K	P	A	.	.	.	.	.	.	.	.	.	.	.	N	I	S	K	.	A	E	N	R	T	D	L	K	Q	A	I	A	L	A	L
Template Known Secondary structure																		B								T	T	S															S	S							.	.	.	.	.	.	.	.	.	.	.					.		S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.					.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.												.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	V	K	M	A	W	P	Q	A	R	V	H	G	L	L	V	Q	S	M	A	N	R	A	G	A	Q	E	L	R	V	V	V	E	H	D	P	V	F	G	P	L	I	M	L	G	E	G	G	V	E	W	R	P	E	D	Q	A	V	V	A	L	P	P	L	N	M	N	L	A	R	Y	L	V	I	Q	G	I	K	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.								.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.								.	.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	D	S	R	.	.	.	.	.	.	.	.	.	V	L	I	E	Q	G	V	.	.	.	D	A	R	E	I	E	V	G	I	L	G	N	T	D	V	K	T	T	L	P	G	E	I	V	.	.	.	.	.	.	.	.	.	T	M	A	I	P	A	E	I	D	P	V	I	V	E	K	M	R	D	Y	A	A	T	A
Template Known Secondary structure					S		.	.	.	.	.	.	.	.	.								.	.	.		S										S	S	S											.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.								.	.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.										.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.										.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	R	A	R	S	A	L	R	P	L	D	V	A	G	L	S	Q	L	L	V	Q	V	S	N	L	I	V	D	C	P	E	I	Q	R	L	D	I	H	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	T	L	G	C	C	G	L	S	R	C	D	F	F	.	.	.	.	.	.	.	.	.	.	.	.	L	T	E	D	G	K	V	Y	L	N	E	L	N	T
Template Known Secondary structure					T	T											.	.	.	.	.	.	.	.	.	.	.	.			T	T										S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.													.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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