Job Description P76594 Confidence 98.07% Date Thu Jan 5 12:24:56 GMT 2012 Rank 199 Aligned Residues 164 % Identity 15% Template c3i12A_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 Resolution 2.20 Å

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		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.					.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		H	E	V	Q	P	I	L	Q	A	Y	G	M	N	T	L	P	T	W	I	A	S	D	S	T	.	.	.	.	E	A	V	H	I	A	E	Q	I	G	Y	P	V	A	L	K	L	R	S	P	D	I	P	H	K	S	E	V	Q	G	V	M	L	Y	L	R	T	A	N	E	V	Q	Q	A	A	N	A	I	F	D	R	V
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																		.	.	.	.	.												.
Template Conservation																																															.	.	.	.	.												.
Template Sequence		D	V	A	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R	T	N	R	H	A	F	S	F	A	E	V	E	S	R	L	G	L	P	L	F	V	K	P	.	.	.	.	.	A	N	Q	G	S	S	V	G	V	S	K	.	V	A	N	E	A	Q	Y	Q	Q	A	V	A	L	A	F	E	F	D
Template Known Secondary structure											T	T			B								T	T	T	G	G	G												S	S						.	.	.	.	.	T	T			T	T	T	T				.		S	S
Template Predicted Secondary structure																																															.	.	.	.	.												.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.				.	.	.	.	.	600	.	.	.	.	.	.					.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure																																					.	.	.													.	.	.	.
Query SS confidence																																					.	.	.													.	.	.	.
Query Sequence		K	M	A	W	P	Q	A	R	V	H	G	L	L	V	Q	S	M	A	N	R	A	G	A	Q	E	L	R	V	V	V	E	H	D	P	V	.	.	.	F	G	P	L	I	M	L	G	E	G	G	V	.	.	.	.	E	W	R	P	E	D	Q	A	V	V	A	L	P	P	L	N	M	N	L	A	R	Y	L	V	I	Q
Query Conservation																																					.	.	.													.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.								.	.	.															.	.	.													.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.								.	.	.
Template Sequence		H	K	.	.	.	.	.	.	.	.	.	V	V	V	E	Q	G	I	.	.	.	K	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S	T	C	G	E	I	V	L	N	S	E	F	Y	D	T	K	Y	I	D	D	N	G	A	Q	V	V	V	P	A	Q	I	P	S	E	V	N	D	K	I	R	A	I
Template Known Secondary structure		S		.	.	.	.	.	.	.	.	.								.	.	.		S										S	S	S													T	T			T	T	T	T	S	G	G	G	G					S	S		S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		216	.										.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K	S	K	K	I	R	A	R	S	A	L	R	P	L	D	V	A	G	L	S	Q	L	L	V	Q	V	S	N	L	I	V	D	C	P	E	I	Q	R	L	D	I	H	P
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	.	.	.	.	.	.	.	.	.	.	.	.	L	T	A	D	N	E	V	V	I	N	E	I	N	T
Template Known Secondary structure									T	T											.	.	.	.	.	.	.	.	.	.	.	.			T	T										S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.													.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions